SMTL ID : 5ye9.1 (1 other biounit)

The crystal structure of Lp-PLA2 in complex with a novel inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.88 Å

Oligo State

monomer

Ligands

1 x 8U6: N-[4-[(3-cyano-4-naphthalen-2-yloxy-phenyl)sulfamoyl]phenyl]ethanamide(Non-covalent)

8U6.1: 17 residues within 4Å: Chain A: L.66, F.69, G.111, L.112, G.113, A.114, L.118, Y.119, H.231, S.232, H.310, Q.311, A.314, D.315, F.316, L.328, L.330 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:L.66, A:F.69, A:A.114, A:L.118, A:F.316, A:F.316, A:L.328, A:L.330 Hydrogen bonds: A:L.112, A:L.112, A:Y.119, A:S.232, A:F.316 Water bridges: A:F.233 pi-Stacking: A:F.69, A:H.310

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: Y.280, F.281, V.309, H.310 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.310 Water bridges: A:Q.311 SO4.3: 4 residues within 4Å: Chain A: N.59, K.60, E.61, R.81 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:N.59, A:K.60 Water bridges: A:R.81 Salt bridges: A:K.60, A:R.81 SO4.4: 5 residues within 4Å: Chain A: S.267, R.268, I.269, P.270, K.298 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:K.298

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Liu, Q. et al., Structure-Guided Discovery of Novel, Potent, and Orally Bioavailable Inhibitors of Lipoprotein-Associated Phospholipase A2. J. Med. Chem. (2017)

Release Date

2018-07-25

Peptides

Platelet-activating factor acetylhydrolase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Platelet-activating factor acetylhydrolase

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