SMTL ID : 5i8q.1 (1 other biounit)

S. cerevisiae Prp43 in complex with RNA and ADPNP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 4.20 Å

Oligo State

monomer

Ligands

1 x U- U- U- U- U- U- U- U- U: RNA (5'-R(P*UP*UP*UP*UP*UP*UP*UP*UP*U)-3')(Non-covalent)

U-U-U-U-U-U-U-U-U.1: 30 residues within 4Å: Chain A: P.148, R.149, R.150, I.176, R.177, F.178, T.192, G.194, M.195, R.198, E.199, G.312, E.313, Y.345, G.346, T.376, N.377, K.398, K.400, L.411, Q.519, P.521, L.549, P.552, Q.622, R.625, L.626, R.629, T.702, Y.706 Protein-ligand interaction information (PLIP) not available

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.123, D.215, S.382 Ligands: ANP.3 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:T.123, A:D.215, A:S.382

1 x ANP: PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER(Non-covalent)

ANP.3: 17 residues within 4Å: Chain A: E.117, T.118, G.119, S.120, G.121, K.122, T.123, T.124, R.159, E.216, A.248, S.382, T.384, Q.423, R.427, R.430 Ligands: MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.119, A:S.120, A:G.121, A:K.122, A:K.122, A:K.122, A:T.123, A:T.123, A:T.124, A:T.124, A:S.382, A:Q.423, A:R.427, A:R.427, A:R.430, A:R.430 Salt bridges: A:R.430 pi-Cation interactions: A:R.159, A:R.159

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, Y. et al., Structure of the DEAH/RHA ATPase Prp43p bound to RNA implicates a pair of hairpins and motif Va in translocation along RNA. RNA (2017)

Release Date

2017-02-01

Peptides

Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43

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