SMTL ID : 5jpt.2 (1 other biounit)

CRYSTAL STRUCTURE OF THE PRP43P DEAH-BOX RNA HELICASE IN COMPLEX WITH CDP

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.94 Å

Oligo State

monomer

Ligands

1 x CDP: CYTIDINE-5'-DIPHOSPHATE(Non-covalent)

CDP.1: 17 residues within 4Å: Chain A: E.117, T.118, G.119, S.120, G.121, K.122, T.123, T.124, S.155, V.156, R.159, F.357, L.383, T.384, D.386, R.430 Ligands: MG.2 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:V.156, A:L.383 Hydrogen bonds: A:G.119, A:S.120, A:G.121, A:K.122, A:T.123, A:T.124, A:S.155, A:D.386, A:R.430 Salt bridges: A:K.122

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 4 residues within 4Å: Chain A: T.123, E.216, S.382 Ligands: CDP.1 5 PLIP interactions: 1 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:T.123, H2O.1, H2O.1, H2O.1, H2O.1

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Robert-Paganin, J. et al., Functional link between DEAH/RHA helicase Prp43 activation and ATP base binding. Nucleic Acids Res. (2017)

Release Date

2017-02-22

Peptides

Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43

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