SMTL ID : 5y88.1

Cryo-EM structure of the intron-lariat spliceosome ready for disassembly from S.cerevisiae at 3.5 angstrom

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY 3.70 Å
Oligo State
hetero-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-1-2-2-2-2-2-2-2-1-1-4-mer
Ligands
1 x U- U- U- U- U- U- U- U- U: RNA (intron or U6 snRNA)(Non-covalent)
1 x IHP: INOSITOL HEXAKISPHOSPHATE(Non-covalent)
1 x GTP: GUANOSINE-5'-TRIPHOSPHATE(Non-covalent)
6 x MG: MAGNESIUM ION(Non-covalent)(Non-functional Binders)
6 x ZN: ZINC ION(Non-covalent)
Links
RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP
Citation
Wan, R. et al., Structure of an Intron Lariat Spliceosome from Saccharomyces cerevisiae. Cell(Cambridge,Mass.) (2017)
Release Date
2018-08-01
Peptides
Pre-mRNA-splicing factor 8: A
Pre-mRNA-splicing factor SNU114: C
Pre-mRNA-splicing factor SNT309: G
Pre-mRNA-splicing factor SYF1: H
Pre-mRNA-splicing factor CLF1: I
Pre-mRNA-splicing factor CEF1: J
Pre-mRNA-splicing factor SYF2: K
Pre-mRNA-splicing factor BUD31: L
Pre-mRNA-splicing factor SLT11: M
Pre-mRNA-splicing factor CWC2: N
Pre-mRNA-splicing factor PRP46: O
Pre-mRNA-splicing factor CWC15: P
Pre-mRNA-processing protein 45: Q
Protein CWC16: R
Pre-mRNA-processing factor 17: S
Pre-mRNA-splicing factor CWC23: T
Pre-mRNA-splicing factor SPP382: U
Pre-mRNA-splicing factor NTR2: V
Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43: W
Small nuclear ribonucleoprotein-associated protein B: X6
Small nuclear ribonucleoprotein E: Y7
Small nuclear ribonucleoprotein F: Z8
Small nuclear ribonucleoprotein G: 09
Small nuclear ribonucleoprotein Sm D3: 1a
Small nuclear ribonucleoprotein Sm D1: 2b
Small nuclear ribonucleoprotein Sm D2: 3c
U2 small nuclear ribonucleoprotein A': 4
U2 small nuclear ribonucleoprotein B'': 5
Pre-mRNA-processing factor 19: defg
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
C
C
G
G
H
H
I
I
J
J
K
K
L
L
M
M
N
N
O
O
P
P
Q
Q
R
R
S
S
T
T
U
U
V
V
W
W
X
a
6
h
Y
b
7
i
Z
c
8
j
0
d
9
k
1
e
a
l
2
f
b
m
3
g
c
n
4
o
5
p
d
q
e
r
f
s
g
t

Pre-mRNA-splicing factor 8

Pre-mRNA-splicing factor SNU114

Pre-mRNA-splicing factor SNT309

Pre-mRNA-splicing factor SYF1

Pre-mRNA-splicing factor CLF1

Pre-mRNA-splicing factor CEF1

Pre-mRNA-splicing factor SYF2

Pre-mRNA-splicing factor BUD31

Pre-mRNA-splicing factor SLT11

Pre-mRNA-splicing factor CWC2

Pre-mRNA-splicing factor PRP46

Pre-mRNA-splicing factor CWC15

Pre-mRNA-processing protein 45

Protein CWC16

Pre-mRNA-processing factor 17

Pre-mRNA-splicing factor CWC23

Pre-mRNA-splicing factor SPP382

Pre-mRNA-splicing factor NTR2

Pre-mRNA-splicing factor ATP-dependent RNA helicase PRP43

Small nuclear ribonucleoprotein-associated protein B

Small nuclear ribonucleoprotein E

Toggle Identical (Y7)

Small nuclear ribonucleoprotein F

Toggle Identical (Z8)

Small nuclear ribonucleoprotein G

Toggle Identical (09)

Small nuclear ribonucleoprotein Sm D3

Toggle Identical (1a)

Small nuclear ribonucleoprotein Sm D1

Toggle Identical (2b)

Small nuclear ribonucleoprotein Sm D2

U2 small nuclear ribonucleoprotein A'

U2 small nuclear ribonucleoprotein B''

Pre-mRNA-processing factor 19

Related Entries With Identical Sequence

3jcm.1 | 3kx2.1 | 3kx2.2 | 5gam.1 | 5gan.1 | 5gao.1 | 5gap.1 | 5gm6.1 | 5gmk.1 | 5i8q.1 | 5i8q.2 | 5jpt.1 | 5jpt.2 | 5lj3.1 | 5lj5.1 | 5mps.1 | 5mq0.1 | 5nrl.1 | 5wsg.1 | 5ylz.1 | 5zwm.1 | 5zwn.1 | 5zwo.1 | 6bk8.1 | 6exn.1 | 6g90.1 | 6j6g.1 | 6j6h.1 | 6j6n.1 | 6j6q.1  more...