- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x DLS- LYS- CYS- LYS- LEU- CYS- LEU- LYS- NH2: DLS-LYS-CYS-LYS-LEU-CYS-LYS-LYS-NH2(Non-covalent)
- 4 x ZDC: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid(Non-covalent)
- 8 x CA: CALCIUM ION(Non-covalent)
CA.3: 6 residues within 4Å:- Chain A: E.95, D.99, D.101, D.104
- Ligands: ZDC.2, CA.4
5 PLIP interactions:5 interactions with chain A- Metal complexes: A:E.95, A:E.95, A:D.99, A:D.101, A:D.104
CA.4: 7 residues within 4Å:- Chain A: N.21, D.101, N.103, D.104
- Chain D: G.114
- Ligands: ZDC.2, CA.3
4 PLIP interactions:3 interactions with chain A, 1 interactions with chain D- Metal complexes: A:N.21, A:D.101, A:D.104, D:G.114
CA.5: 7 residues within 4Å:- Chain A: G.114
- Chain D: N.21, D.101, N.103, D.104
- Ligands: ZDC.6, CA.12
4 PLIP interactions:1 interactions with chain A, 3 interactions with chain D- Metal complexes: A:G.114, D:N.21, D:D.101, D:D.104
CA.7: 6 residues within 4Å:- Chain B: E.95, D.99, D.101, D.104
- Ligands: CA.8, ZDC.13
5 PLIP interactions:5 interactions with chain B- Metal complexes: B:E.95, B:E.95, B:D.99, B:D.101, B:D.104
CA.8: 7 residues within 4Å:- Chain B: N.21, D.101, N.103, D.104
- Chain C: G.114
- Ligands: CA.7, ZDC.13
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain C- Metal complexes: B:N.21, B:D.101, B:D.104, C:G.114
CA.9: 7 residues within 4Å:- Chain B: G.114
- Chain C: N.21, D.101, N.103, D.104
- Ligands: ZDC.10, CA.11
4 PLIP interactions:3 interactions with chain C, 1 interactions with chain B- Metal complexes: C:N.21, C:D.101, C:D.104, B:G.114
CA.11: 6 residues within 4Å:- Chain C: E.95, D.99, D.101, D.104
- Ligands: CA.9, ZDC.10
5 PLIP interactions:5 interactions with chain C- Metal complexes: C:E.95, C:E.95, C:D.99, C:D.101, C:D.104
CA.12: 6 residues within 4Å:- Chain D: E.95, D.99, D.101, D.104
- Ligands: CA.5, ZDC.6
5 PLIP interactions:5 interactions with chain D- Metal complexes: D:E.95, D:E.95, D:D.99, D:D.101, D:D.104
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Di Bonaventura, I. et al., Chemical space guided discovery of antimicrobial bridged bicyclic peptides against Pseudomonas aeruginosa and its biofilms. Chem Sci (2017)
- Release Date
- 2017-08-23
- Peptides
- Fucose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.89 Å
- Oligo State
- homo-tetramer
- Ligands
- 1 x DLS- LYS- CYS- LYS- LEU- CYS- LEU- LYS- NH2: DLS-LYS-CYS-LYS-LEU-CYS-LYS-LYS-NH2(Non-covalent)
- 4 x ZDC: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid(Non-covalent)
- 8 x CA: CALCIUM ION(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Di Bonaventura, I. et al., Chemical space guided discovery of antimicrobial bridged bicyclic peptides against Pseudomonas aeruginosa and its biofilms. Chem Sci (2017)
- Release Date
- 2017-08-23
- Peptides
- Fucose-binding lectin: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D