- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x M9I: N-(alpha-L-Fucopyranosyl)benzamide(Non-covalent)
M9I.3: 12 residues within 4Å:- Chain A: N.21, S.22, S.23, E.95, D.96, T.98, D.99, D.101, D.104
- Chain B: G.114
- Ligands: CA.1, CA.2
10 PLIP interactions:10 interactions with chain A- Hydrogen bonds: A:S.23, A:D.96, A:D.101, A:D.101, A:D.104
- Water bridges: A:S.22, A:S.23, A:S.23, A:D.99, A:D.101
M9I.9: 12 residues within 4Å:- Chain A: G.114
- Chain B: N.21, S.22, S.23, E.95, D.96, G.97, D.99, D.101, D.104
- Ligands: CA.7, CA.8
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain A- Hydrogen bonds: B:S.23, B:D.96, A:G.114
- Water bridges: B:S.22
M9I.13: 13 residues within 4Å:- Chain C: N.21, S.22, S.23, E.95, D.96, G.97, T.98, D.99, D.101, D.104
- Chain D: G.114
- Ligands: CA.11, CA.12
10 PLIP interactions:9 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:S.23, C:D.96, C:D.99, D:G.114
- Water bridges: C:S.22, C:S.23, C:S.23, C:D.99, C:D.99, C:D.99
M9I.16: 12 residues within 4Å:- Chain C: G.114
- Chain D: N.21, S.22, S.23, E.95, D.96, G.97, D.99, D.101, D.104
- Ligands: CA.14, CA.15
8 PLIP interactions:7 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:S.23, D:D.96, D:D.99, C:G.114
- Water bridges: D:S.22, D:S.23, D:S.23, D:D.99
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 2 residues within 4Å:- Chain A: N.70, G.71
No protein-ligand interaction detected (PLIP)EDO.5: 1 residues within 4Å:- Chain A: N.34
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:N.34
EDO.6: 5 residues within 4Å:- Chain A: N.29, Q.66, V.67, S.68, P.73
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:N.29
- Water bridges: A:V.67, A:V.67
EDO.10: 1 residues within 4Å:- Chain B: T.7
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain C- Hydrogen bonds: B:T.7, B:T.7
- Water bridges: C:N.85
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mala, P. et al., Discovery of N -beta-l-Fucosyl Amides as High-Affinity Ligands for the Pseudomonas aeruginosa Lectin LecB. J.Med.Chem. (2022)
- Release Date
- 2022-11-02
- Peptides
- Fucose-binding lectin PA-IIL: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
BBBC
CCCD
DDD
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x M9I: N-(alpha-L-Fucopyranosyl)benzamide(Non-covalent)
- 4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mala, P. et al., Discovery of N -beta-l-Fucosyl Amides as High-Affinity Ligands for the Pseudomonas aeruginosa Lectin LecB. J.Med.Chem. (2022)
- Release Date
- 2022-11-02
- Peptides
- Fucose-binding lectin PA-IIL: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AAAB
BBBC
CCCD
DDD