- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.27 Å
- Oligo State
- hetero-4-3-mer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x ZDC: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid(Non-covalent)(Post Translational Modification)
ZDC.7: 13 residues within 4Å:- Chain C: N.21, S.22, S.23, T.45, E.95, D.96, G.97, D.99, D.101, D.104
- Chain D: G.114
- Ligands: CA.5, CA.6
7 PLIP interactions:6 interactions with chain C, 1 interactions with chain D- Hydrophobic interactions: C:T.45
- Hydrogen bonds: C:S.23, C:D.99, C:D.104, D:G.114
- Water bridges: C:G.24, C:D.99
ZDC.10: 17 residues within 4Å:- Chain A: N.21, S.22, S.23, T.45, E.95, D.96, G.97, D.99, D.101, D.104
- Chain B: G.114
- Chain E: K.1, K.2, L.3, L.4
- Ligands: CA.1, CA.2
10 PLIP interactions:5 interactions with chain A, 1 interactions with chain B, 4 interactions with chain E- Hydrophobic interactions: A:T.45, E:L.3, E:L.4
- Hydrogen bonds: A:S.23, A:S.23, A:D.99, A:D.104, B:G.114, E:L.3, E:L.4
ZDC.11: 15 residues within 4Å:- Chain A: G.114
- Chain B: N.21, S.22, S.23, E.95, D.96, D.99, D.101, D.104
- Chain F: K.1, K.2, L.3, L.4
- Ligands: CA.3, CA.4
9 PLIP interactions:4 interactions with chain F, 1 interactions with chain A, 4 interactions with chain B- Hydrophobic interactions: F:L.3, F:L.4
- Hydrogen bonds: F:L.3, F:L.4, A:G.114, B:S.23, B:D.99, B:D.104, B:D.104
ZDC.12: 13 residues within 4Å:- Chain C: G.114
- Chain D: N.21, S.22, S.23, E.95, D.96, G.97, D.99, D.101, D.104
- Chain G: K.1
- Ligands: CA.8, CA.9
7 PLIP interactions:6 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:S.23, D:S.23, D:D.99, D:D.104, D:D.104, C:G.114
- Water bridges: D:D.99
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Personne, H. et al., To Fold or Not to Fold: Diastereomeric Optimization of an alpha-Helical Antimicrobial Peptide. J.Med.Chem. (2023)
- Release Date
- 2023-05-31
- Peptides
- Fucose-binding lectin PA-IIL: ABCD
Mixed-chirality peptide FHP5: EFG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.27 Å
- Oligo State
- hetero-4-3-mer
- Ligands
- 8 x CA: CALCIUM ION(Non-covalent)
- 4 x ZDC: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid(Non-covalent)(Post Translational Modification)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Personne, H. et al., To Fold or Not to Fold: Diastereomeric Optimization of an alpha-Helical Antimicrobial Peptide. J.Med.Chem. (2023)
- Release Date
- 2023-05-31
- Peptides
- Fucose-binding lectin PA-IIL: ABCD
Mixed-chirality peptide FHP5: EFG - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
G