SMTL ID : 5iu8.1

Crystal structure of stabilized A2A adenosine receptor A2AR-StaR2-bRIL in complex with compound 12f at 2.0A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: D.61, S.100, N.385 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.61, A:S.100 Water bridges: A:D.61

1 x 6DZ: 2-(furan-2-yl)-N~5~-[2-(4-methylpiperazin-1-yl)ethyl][1,2,4]triazolo[1,5-a][1,3,5]triazine-5,7-diamine(Non-covalent)

6DZ.2: 11 residues within 4Å: Chain A: L.94, F.177, E.178, M.186, W.351, L.354, H.355, N.358, L.372, M.375, I.379 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.94, A:W.351, A:L.354 Hydrogen bonds: A:N.358, A:N.358 Water bridges: A:F.177 Salt bridges: A:E.178, A:E.178, A:E.178 pi-Stacking: A:F.177, A:F.177

1 x HTO: HEPTANE-1,2,3-TRIOL(Non-covalent)

HTO.3: 8 residues within 4Å: Chain A: L.46, N.48, T.50, N.51, A.336, A.340, Y.393, I.397 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:A.340, A:Y.393 Hydrogen bonds: A:N.48, A:N.48, A:N.51 Water bridges: A:T.50, A:R.396

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.4: 9 residues within 4Å: Chain A: F.71, A.81, A.82, G.85, F.88, I.89 Ligands: CLR.7, OLB.28, OLC.31 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:F.71, A:A.81, A:F.88, A:I.89, A:I.89 Hydrogen bonds: A:A.82 Water bridges: A:Q.172 CLR.5: 9 residues within 4Å: Chain A: L.349, L.352, P.353, I.357, F.360, C.367, S.368, L.374 Ligands: OLA.8 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.349, A:L.352, A:P.353, A:I.357, A:F.360, A:L.374 Hydrogen bonds: A:S.368 Water bridges: A:S.368 CLR.6: 7 residues within 4Å: Chain A: L.196, I.356, C.359, F.360, F.363, C.364 Ligands: OLC.29 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.196, A:I.356, A:F.360, A:F.360, A:F.360, A:F.363, A:F.363 CLR.7: 8 residues within 4Å: Chain A: H.84, G.85, F.88, F.142, M.149 Ligands: CLR.4, OLA.19, OLC.31 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.88, A:F.142

19 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.8: 4 residues within 4Å: Chain A: P.371, L.377 Ligands: CLR.5, OLA.21 Ligand excluded by PLIP OLA.9: 8 residues within 4Å: Chain A: F.53, A.106, I.109, D.110, I.113, V.125, I.133, C.137 Ligand excluded by PLIP OLA.10: 7 residues within 4Å: Chain A: G.14, S.15, V.21, S.76, L.372, Y.376, V.380 Ligand excluded by PLIP OLA.11: 3 residues within 4Å: Chain A: I.136 Ligands: OLA.14, OLA.17 Ligand excluded by PLIP OLA.12: 3 residues within 4Å: Ligands: OLA.26, OLB.27, OLC.30 Ligand excluded by PLIP OLA.13: 5 residues within 4Å: Chain A: L.28, L.31, G.32, W.38, F.391 Ligand excluded by PLIP OLA.14: 5 residues within 4Å: Chain A: R.129, G.132, I.136, V.139 Ligands: OLA.11 Ligand excluded by PLIP OLA.15: 5 residues within 4Å: Chain A: V.34, C.37, W.38, W.41 Ligands: OLC.32 Ligand excluded by PLIP OLA.16: 4 residues within 4Å: Chain A: I.12, S.16, T.20 Ligands: OLB.27 Ligand excluded by PLIP OLA.17: 8 residues within 4Å: Chain A: H.84, A.143, M.149, L.150, G.151, N.153 Ligands: OLA.11, OLA.19 Ligand excluded by PLIP OLA.18: 5 residues within 4Å: Chain A: Y.188, F.192, V.197, L.200 Ligands: OLC.29 Ligand excluded by PLIP OLA.19: 7 residues within 4Å: Chain A: H.84, F.142, M.149, L.150 Ligands: CLR.7, OLA.17, OLA.20 Ligand excluded by PLIP OLA.20: 5 residues within 4Å: Chain A: A.131, I.134, A.135 Ligands: OLA.19, OLC.31 Ligand excluded by PLIP OLA.21: 2 residues within 4Å: Chain A: W.373 Ligands: OLA.8 Ligand excluded by PLIP OLA.22: 3 residues within 4Å: Chain A: T.384, V.388, F.391 Ligand excluded by PLIP OLA.23: 2 residues within 4Å: Chain A: V.388, I.392 Ligand excluded by PLIP OLA.24: 3 residues within 4Å: Chain A: I.342, G.345, L.346 Ligand excluded by PLIP OLA.25: 8 residues within 4Å: Chain A: L.196, L.199, L.200, L.203, Y.206, A.341, A.344, G.345 Ligand excluded by PLIP OLA.26: 6 residues within 4Å: Chain A: T.74, T.77, F.79 Ligands: OLA.12, OLB.28, OLC.30 Ligand excluded by PLIP

2 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLB.27: 9 residues within 4Å: Chain A: P.11, I.12, S.15, I.19, L.23, S.76, T.77 Ligands: OLA.12, OLA.16 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.23, A:T.77 Hydrogen bonds: A:P.11, A:S.15, A:S.76 OLB.28: 11 residues within 4Å: Chain A: V.66, L.67, P.70, F.71, T.74, F.79, C.80, Q.172 Ligands: CLR.4, OLA.26, OLC.30 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.67, A:P.70, A:F.71, A:F.79 Hydrogen bonds: A:C.80, A:Q.172

4 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.29: 5 residues within 4Å: Chain A: F.192, L.196, F.363 Ligands: CLR.6, OLA.18 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.192, A:L.196, A:F.363, A:F.363, A:F.363 OLC.30: 3 residues within 4Å: Ligands: OLA.12, OLA.26, OLB.28 No protein-ligand interaction detected (PLIP) OLC.31: 14 residues within 4Å: Chain A: Y.52, V.55, S.56, A.59, L.63, L.67, F.92, G.127, A.131, I.134, W.138 Ligands: CLR.4, CLR.7, OLA.20 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:Y.52, A:V.55, A:A.59, A:L.63, A:L.67, A:F.92, A:I.134, A:W.138, A:W.138 Hydrogen bonds: A:G.127 OLC.32: 7 residues within 4Å: Chain A: C.37, V.40, W.41, Y.52, V.55, A.59 Ligands: OLA.15 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.55, A:A.59 Hydrogen bonds: A:W.41, A:Y.52

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Segala, E. et al., Controlling the Dissociation of Ligands from the Adenosine A2A Receptor through Modulation of Salt Bridge Strength. J.Med.Chem. (2016)

Release Date

2016-06-29

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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