- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 6J8: [(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(4-methoxyphenyl)pentyl]phosphonic acid(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 6 residues within 4Å:- Chain A: K.139, D.165, S.166, E.167, E.249
- Ligands: 6J8.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.165, A:E.167, A:E.167, A:E.249
MN.12: 5 residues within 4Å:- Chain B: K.139, D.165, E.167, E.249
- Ligands: 6J8.11
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.165, B:E.167, B:E.167, B:E.249
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.4: 4 residues within 4Å:- Chain A: E.265, V.266, Y.340
- Ligands: EDO.8
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.266, A:V.266
EDO.5: 3 residues within 4Å:- Chain A: D.260, Y.261, N.262
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Y.261, A:N.262, A:N.262
EDO.6: 6 residues within 4Å:- Chain A: S.191, I.196, N.197, V.259, D.260, D.263
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:N.197, A:D.260
EDO.7: 9 residues within 4Å:- Chain A: V.143, S.144, A.145, G.146, F.147, N.347, F.348, P.350, T.351
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:V.143, A:F.147, A:T.351, A:T.351
EDO.8: 5 residues within 4Å:- Chain A: L.330, K.337, Y.340, I.344
- Ligands: EDO.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:K.337
EDO.9: 6 residues within 4Å:- Chain A: D.373, S.376, I.377, Q.380, I.415, H.419
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:S.376, A:Q.380
EDO.10: 1 residues within 4Å:- Chain A: E.395
No protein-ligand interaction detected (PLIP)EDO.13: 10 residues within 4Å:- Chain B: V.143, S.144, A.145, G.146, F.147, N.347, F.348, P.350, T.351, I.401
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.143, B:F.147, B:T.351
EDO.14: 4 residues within 4Å:- Chain B: E.265, V.266, L.330, Y.340
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.266, B:V.266, B:Y.340
EDO.15: 5 residues within 4Å:- Chain B: I.196, N.197, V.259, D.260, D.263
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.197, B:D.260
EDO.16: 8 residues within 4Å:- Chain A: Q.173, C.174, L.175, D.176
- Chain B: Q.173, C.174, L.175, D.176
6 PLIP interactions:4 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.173
- Water bridges: B:D.176, B:D.176, B:D.176, A:Q.173, A:L.175
EDO.17: 2 residues within 4Å:- Chain B: K.36, I.37
1 PLIP interactions:1 interactions with chain B- Water bridges: B:N.39
EDO.18: 3 residues within 4Å:- Chain B: N.154, I.155, K.157
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.154, B:K.157
EDO.19: 3 residues within 4Å:- Chain B: G.18, G.21, G.114
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:G.114
- Water bridges: B:S.22, B:S.22
EDO.20: 3 residues within 4Å:- Chain B: N.218, T.220, N.223
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.223, B:N.223
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sooriyaarachchi, S. et al., Targeting an Aromatic Hotspot in Plasmodium falciparum 1-Deoxy-d-xylulose-5-phosphate Reductoisomerase with beta-Arylpropyl Analogues of Fosmidomycin. Chemmedchem (2016)
- Release Date
- 2016-08-24
- Peptides
- 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x 6J8: [(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-(4-methoxyphenyl)pentyl]phosphonic acid(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 1 x GOL: GLYCEROL(Non-functional Binders)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sooriyaarachchi, S. et al., Targeting an Aromatic Hotspot in Plasmodium falciparum 1-Deoxy-d-xylulose-5-phosphate Reductoisomerase with beta-Arylpropyl Analogues of Fosmidomycin. Chemmedchem (2016)
- Release Date
- 2016-08-24
- Peptides
- 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B