SMTL ID : 5jd4.1 (3 other biounits)

Crystal structure of LAE6 Ser161Ala mutant, an alpha/beta hydrolase enzyme from the metagenome of Lake Arreo, Spain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: P.268, K.296, H.333 Chain B: Q.318, K.321 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.318 Salt bridges: B:K.321, A:K.296, A:H.333 SO4.2: 7 residues within 4Å: Chain A: R.284, D.288, I.291, Y.299 Chain B: R.284, D.288, I.291 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:D.288 Salt bridges: A:R.284, B:R.284 SO4.8: 5 residues within 4Å: Chain A: Q.318, K.321 Chain B: P.268, K.296, H.333 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Salt bridges: B:K.296, B:H.333, A:K.321 Hydrogen bonds: A:Q.318 SO4.9: 2 residues within 4Å: Chain B: R.126 Ligands: GOL.10 1 PLIP interactions: 1 interactions with chain B Salt bridges: B:R.126

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: Q.20, R.28, L.31, D.32, G.228, Y.229 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.20, A:R.28, A:D.32 Water bridges: A:D.35, A:E.227 GOL.5: 5 residues within 4Å: Chain A: E.73, R.90, R.92, G.99, G.170 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:E.73, A:R.90, A:R.92, A:S.168 Water bridges: A:E.167 GOL.10: 6 residues within 4Å: Chain A: G.335 Chain B: R.126, S.317, L.320, D.324 Ligands: SO4.9 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Water bridges: A:A.332, B:D.324 Hydrogen bonds: B:R.126 GOL.11: 6 residues within 4Å: Chain B: R.196, D.197, L.253, A.260, T.261, D.262 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.196, B:T.261, B:D.262, B:D.262

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 1 residues within 4Å: Chain A: H.50 Ligand excluded by PLIP

2 x PE3: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL(Non-functional Binders)

PE3.6: 3 residues within 4Å: Chain A: R.126, L.320, D.324 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:R.126, A:R.126 Water bridges: A:D.67, A:D.67 PE3.12: 7 residues within 4Å: Chain A: I.291, G.294 Chain B: G.275, R.280, D.281, R.284, N.301 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.280, B:R.284 Water bridges: B:G.275, B:D.281, A:G.294

2 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.7: 8 residues within 4Å: Chain A: G.109, G.110, G.111, A.182, A.183, L.231, M.236, H.307 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.182, A:A.183, A:L.231, A:L.231 Hydrogen bonds: A:G.110, A:G.111, A:A.183, A:H.307 BEN.13: 9 residues within 4Å: Chain B: G.109, G.110, G.111, A.182, A.183, A.212, L.231, M.236, H.307 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:A.182, B:A.183, B:A.212, B:L.231 Hydrogen bonds: B:G.110, B:G.111, B:A.183, B:H.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Martinez, M., Crystal structure of LAE6 Ser161Ala mutant, an alpha/beta hydrolase enzyme from the metagenome of Lake Arreo, Spain. To Be Published

Release Date

2016-05-04

Peptides

LAE6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
H

LAE6

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