SMTL ID : 5jd4.2 (3 other biounits)

Crystal structure of LAE6 Ser161Ala mutant, an alpha/beta hydrolase enzyme from the metagenome of Lake Arreo, Spain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: Q.318, K.321 Chain B: P.268, K.296, H.333 5 PLIP interactions: 2 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:Q.318 Salt bridges: A:K.321, B:K.296, B:H.333 Water bridges: B:K.296 SO4.2: 5 residues within 4Å: Chain A: P.268, K.296, H.333 Chain B: Q.318, K.321 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.318 Salt bridges: B:K.321, A:K.296, A:H.333

8 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 7 residues within 4Å: Chain A: E.46, L.48, P.49, H.50, W.238, E.241 Ligands: CL.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:W.238 Water bridges: A:T.47 GOL.5: 4 residues within 4Å: Chain A: Q.20, L.31, D.32, G.228 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.20 Water bridges: A:Q.20, A:Y.229 GOL.6: 5 residues within 4Å: Chain A: R.90, R.92, G.99, S.168, G.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.90, A:R.90, A:R.92 GOL.7: 5 residues within 4Å: Chain A: R.42, P.43, A.56, V.57, M.60 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:P.43 GOL.10: 4 residues within 4Å: Chain B: E.70, V.71, V.74, R.125 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:V.71, B:V.71, B:R.125, B:R.125 Water bridges: B:V.71, B:A.72 GOL.11: 2 residues within 4Å: Chain B: R.126, K.130 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.126, B:R.126, B:K.130, B:K.130 GOL.12: 7 residues within 4Å: Chain B: N.76, G.77, R.87, F.88, R.89, I.117, E.118 7 PLIP interactions: 7 interactions with chain B Hydrogen bonds: B:G.77, B:R.87, B:F.88, B:F.88, B:R.89 Water bridges: B:N.116, B:E.118 GOL.13: 5 residues within 4Å: Chain B: Q.20, R.28, L.31, D.32, G.228 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:R.28, B:G.228 Water bridges: B:Q.20, B:Q.20

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: H.50 Ligands: GOL.3 Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain B: H.50 Ligand excluded by PLIP

2 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.8: 8 residues within 4Å: Chain A: G.109, G.110, G.111, A.182, A.183, A.212, L.231, H.307 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:A.182, A:A.183, A:A.212, A:L.231 Hydrogen bonds: A:G.110, A:G.111, A:A.183, A:H.307 BEN.14: 9 residues within 4Å: Chain B: G.109, G.110, G.111, A.182, A.183, A.212, L.231, M.236, H.307 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:A.182, B:A.183, B:A.212, B:L.231 Hydrogen bonds: B:G.110, B:G.111, B:A.183, B:H.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Martinez, M., Crystal structure of LAE6 Ser161Ala mutant, an alpha/beta hydrolase enzyme from the metagenome of Lake Arreo, Spain. To Be Published

Release Date

2016-05-04

Peptides

LAE6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
E

LAE6

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