SMTL ID : 5jd4.4 (3 other biounits)

Crystal structure of LAE6 Ser161Ala mutant, an alpha/beta hydrolase enzyme from the metagenome of Lake Arreo, Spain

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.05 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: P.268, K.296, H.333 Chain B: Q.318, K.321 4 PLIP interactions: 2 interactions with chain B, 2 interactions with chain A Hydrogen bonds: B:Q.318 Salt bridges: B:K.321, A:K.296, A:H.333 SO4.10: 5 residues within 4Å: Chain A: Q.318, K.321 Chain B: P.268, K.296, H.333 4 PLIP interactions: 2 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:Q.318 Salt bridges: A:K.321, B:K.296, B:H.333

10 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 4 residues within 4Å: Chain A: R.42, P.43, V.57, M.60 No protein-ligand interaction detected (PLIP) GOL.4: 7 residues within 4Å: Chain A: E.46, L.48, P.49, H.50, W.238, E.241 Ligands: CL.3 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:E.46, A:H.50 Water bridges: A:T.47 GOL.5: 7 residues within 4Å: Chain A: Q.20, L.23, R.28, L.31, D.32, D.35, G.228 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Q.20, A:R.28, A:R.28, A:G.228 Water bridges: A:Y.229 GOL.6: 4 residues within 4Å: Chain A: A.83, R.141, A.150, D.153 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.141, A:R.141, A:D.153 GOL.11: 4 residues within 4Å: Chain B: E.70, V.71, V.74, R.125 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:E.70, B:V.71, B:R.125, B:R.125 Water bridges: B:V.71, B:A.72 GOL.12: 3 residues within 4Å: Chain B: R.126, K.130, L.320 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:R.126, B:R.126, B:K.130 GOL.14: 4 residues within 4Å: Chain B: Q.20, L.23, D.32, G.228 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:D.32 GOL.15: 2 residues within 4Å: Chain B: L.100, E.167 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:E.167 Water bridges: B:G.99 GOL.16: 5 residues within 4Å: Chain A: I.291 Chain B: R.280, D.281, R.284, N.301 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:D.281, B:R.284 Water bridges: B:R.280, B:R.280 GOL.17: 7 residues within 4Å: Chain A: R.284, D.288, Y.299 Chain B: R.284, D.288, I.291, Y.299 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:R.284, B:D.288, A:R.284

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 2 residues within 4Å: Chain A: H.50 Ligands: GOL.4 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: D.252, L.253 Ligand excluded by PLIP CL.13: 2 residues within 4Å: Chain B: P.49, H.50 Ligand excluded by PLIP

1 x PE3: 3,6,9,12,15,18,21,24,27,30,33,36,39-TRIDECAOXAHENTETRACONTANE-1,41-DIOL(Non-functional Binders)

PE3.8: 8 residues within 4Å: Chain A: L.33, M.34, R.42, M.60, S.61, F.230, L.312, F.315 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.42

2 x BEN: BENZAMIDINE(Non-functional Binders)

BEN.9: 9 residues within 4Å: Chain A: G.109, G.110, G.111, A.182, A.183, A.212, L.231, M.236, H.307 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:A.182, A:A.183, A:A.212, A:L.231, A:L.231 Hydrogen bonds: A:G.110, A:G.111, A:A.183, A:H.307 BEN.18: 8 residues within 4Å: Chain B: G.109, G.110, G.111, A.182, A.183, A.212, L.231, H.307 8 PLIP interactions: 8 interactions with chain B Hydrophobic interactions: B:A.182, B:A.183, B:A.212, B:L.231 Hydrogen bonds: B:G.110, B:G.111, B:A.183, B:H.307

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Martinez-Martinez, M., Crystal structure of LAE6 Ser161Ala mutant, an alpha/beta hydrolase enzyme from the metagenome of Lake Arreo, Spain. To Be Published

Release Date

2016-05-04

Peptides

LAE6: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
G

LAE6

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