- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LC7: [(2R)-5-(3-fluorophenyl)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}pentyl]phosphonic acid(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 6 residues within 4Å:- Chain A: K.139, D.165, S.166, E.167, E.249
- Ligands: LC7.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.165, A:E.167, A:E.167, A:E.249
MN.13: 6 residues within 4Å:- Chain B: K.139, D.165, S.166, E.167, E.249
- Ligands: LC7.12
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.165, B:E.167, B:E.167, B:E.249
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 10 residues within 4Å:- Chain A: S.166, E.167, C.202, S.203, S.204, H.269, C.272, I.274, H.275
- Ligands: LC7.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.166, A:S.203, A:I.274, A:H.275
GOL.14: 10 residues within 4Å:- Chain B: S.166, E.167, C.202, S.203, S.204, H.269, C.272, I.274, H.275
- Ligands: LC7.12
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.166, B:S.203, B:I.274
- 2 x 6LB: 4-ethylmorpholine(Non-covalent)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 6 residues within 4Å:- Chain A: S.191, I.196, N.197, V.259, D.260, D.263
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:N.197, A:D.260, A:D.263
- Water bridges: A:S.191
EDO.6: 3 residues within 4Å:- Chain A: E.265, V.266, Y.340
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:V.266, A:V.266
EDO.7: 6 residues within 4Å:- Chain A: D.176, K.179, N.194, N.195, F.280
- Chain B: R.307
7 PLIP interactions:3 interactions with chain A, 4 interactions with chain B- Hydrogen bonds: A:K.179, A:N.195, B:R.307, B:R.307
- Water bridges: A:D.176, B:N.177, B:R.307
EDO.8: 3 residues within 4Å:- Chain A: W.230, Y.291, P.292
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:P.292
EDO.9: 4 residues within 4Å:- Chain A: Q.388, Q.403, I.404, W.407
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.388, A:Q.403, A:Q.403
EDO.10: 6 residues within 4Å:- Chain A: K.150, L.186, D.188, H.254, F.255, D.258
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:K.150, A:F.255, A:D.258
- Water bridges: A:H.254
EDO.11: 8 residues within 4Å:- Chain A: Q.173, C.174, L.175, D.176
- Chain B: Q.173, C.174, L.175, D.176
7 PLIP interactions:5 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:Q.173
- Water bridges: B:D.176, B:D.176, B:D.176, B:N.177, A:Q.173, A:L.175
EDO.16: 2 residues within 4Å:- Chain B: K.36, I.37
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:K.36
EDO.17: 5 residues within 4Å:- Chain B: I.196, N.197, V.259, D.260, D.263
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.197, B:D.260
EDO.18: 6 residues within 4Å:- Chain B: N.131, I.155, H.156, K.157, N.158, A.159
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:I.155, B:K.157, B:N.158, B:A.159
- Water bridges: B:N.158
EDO.19: 3 residues within 4Å:- Chain B: N.218, T.220, N.223
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:N.223, B:N.223
- Water bridges: B:T.220
EDO.20: 6 residues within 4Å:- Chain B: K.150, L.186, D.188, H.254, F.255, D.258
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:K.150, B:L.186
- Water bridges: B:H.254
EDO.21: 3 residues within 4Å:- Chain B: E.265, V.266, Y.340
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.266, B:V.266, B:Y.340
EDO.22: 4 residues within 4Å:- Chain B: T.25, N.29, R.32, Q.58
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.29, B:R.32, B:R.32, B:Q.58
EDO.23: 4 residues within 4Å:- Chain B: Q.388, Q.403, I.404, W.407
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:Q.388, B:Q.403, B:Q.403
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sooriyaarachchi, S. et al., Targeting an Aromatic Hotspot in Plasmodium falciparum 1-Deoxy-d-xylulose-5-phosphate Reductoisomerase with beta-Arylpropyl Analogues of Fosmidomycin. Chemmedchem (2016)
- Release Date
- 2016-08-24
- Peptides
- 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.70 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x LC7: [(2R)-5-(3-fluorophenyl)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}pentyl]phosphonic acid(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x 6LB: 4-ethylmorpholine(Non-covalent)
- 15 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sooriyaarachchi, S. et al., Targeting an Aromatic Hotspot in Plasmodium falciparum 1-Deoxy-d-xylulose-5-phosphate Reductoisomerase with beta-Arylpropyl Analogues of Fosmidomycin. Chemmedchem (2016)
- Release Date
- 2016-08-24
- Peptides
- 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B