- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x L54: {(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-[4-(trifluoromethyl)phenyl]pentyl}phosphonic acid(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
MN.2: 6 residues within 4Å:- Chain A: K.139, D.165, S.166, E.167, E.249
- Ligands: L54.1
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:D.165, A:E.167, A:E.167, A:E.249
MN.9: 6 residues within 4Å:- Chain B: K.139, D.165, S.166, E.167, E.249
- Ligands: L54.8
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:D.165, B:E.167, B:E.167, B:E.249
- 4 x GOL: GLYCEROL(Non-functional Binders)
GOL.3: 10 residues within 4Å:- Chain A: S.166, E.167, C.202, S.203, S.204, H.269, C.272, I.274, H.275
- Ligands: L54.1
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.166, A:S.203, A:I.274, A:H.275
GOL.4: 9 residues within 4Å:- Chain A: Q.173, C.174, L.175, D.176, F.280
- Chain B: Q.173, C.174, L.175, D.176
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:C.174
- Water bridges: B:Q.173, B:D.176, B:N.177, B:R.307, B:R.307
GOL.10: 10 residues within 4Å:- Chain B: S.166, E.167, C.202, S.203, S.204, H.269, C.272, I.274, H.275
- Ligands: L54.8
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:S.166, B:S.203, B:I.274
GOL.11: 5 residues within 4Å:- Chain B: K.157, L.181, T.183, K.184, Q.187
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:L.181, B:Q.187, B:Q.187
- Water bridges: B:K.157, B:K.160, B:K.184
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
EDO.5: 6 residues within 4Å:- Chain A: Y.47, V.48, N.49, H.70, I.115, Q.119
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:V.48
EDO.6: 10 residues within 4Å:- Chain A: V.143, S.144, A.145, G.146, F.147, N.347, F.348, P.350, T.351, I.401
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:F.147, A:T.351, A:T.351
EDO.7: 4 residues within 4Å:- Chain A: K.198, E.265
- Chain B: L.315, D.316
5 PLIP interactions:3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: A:E.265
- Water bridges: A:K.198, A:K.198, B:P.314, B:L.317
EDO.12: 10 residues within 4Å:- Chain B: V.143, S.144, A.145, G.146, F.147, N.347, F.348, P.350, T.351, I.401
3 PLIP interactions:3 interactions with chain B- Hydrogen bonds: B:V.143, B:F.147, B:T.351
EDO.13: 7 residues within 4Å:- Chain B: I.23, V.164, D.165, S.166, M.294, P.297
- Ligands: L54.8
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.166
- Water bridges: B:D.165
EDO.14: 6 residues within 4Å:- Chain B: D.373, S.376, I.377, Q.380, I.415, H.419
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.376, B:Q.380
EDO.15: 6 residues within 4Å:- Chain B: S.191, I.196, N.197, V.259, D.260, D.263
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:S.191, B:D.260
EDO.16: 2 residues within 4Å:- Chain B: N.154, K.157
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:N.154, B:K.157
EDO.17: 5 residues within 4Å:- Chain B: T.25, L.28, N.29, R.32, Q.58
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:N.29, B:R.32, B:R.32, B:Q.58
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sooriyaarachchi, S. et al., Targeting an Aromatic Hotspot in Plasmodium falciparum 1-Deoxy-d-xylulose-5-phosphate Reductoisomerase with beta-Arylpropyl Analogues of Fosmidomycin. Chemmedchem (2016)
- Release Date
- 2016-08-24
- Peptides
- 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.60 Å
- Oligo State
- homo-dimer
- Ligands
- 2 x L54: {(2R)-2-{2-[hydroxy(methyl)amino]-2-oxoethyl}-5-[4-(trifluoromethyl)phenyl]pentyl}phosphonic acid(Non-covalent)
- 2 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x GOL: GLYCEROL(Non-functional Binders)
- 9 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sooriyaarachchi, S. et al., Targeting an Aromatic Hotspot in Plasmodium falciparum 1-Deoxy-d-xylulose-5-phosphate Reductoisomerase with beta-Arylpropyl Analogues of Fosmidomycin. Chemmedchem (2016)
- Release Date
- 2016-08-24
- Peptides
- 1-deoxy-D-xylulose 5-phosphate reductoisomerase, apicoplastic: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B