SMTL ID : 5kjh.1

Crystal structure of an active polycomb repressive complex 2 in the stimulated state

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.27 Å

Oligo State

hetero-oligomer

Ligands

8 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain B: C.546, C.567, C.574, C.579 Ligands: ZN.2, ZN.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.546, B:C.567, B:C.574, B:C.579 ZN.2: 6 residues within 4Å: Chain B: C.555, C.574, C.582, C.603 Ligands: ZN.1, ZN.3 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.555, B:C.574, B:C.582, B:C.603 ZN.3: 7 residues within 4Å: Chain B: C.546, C.548, C.555, C.565, C.574 Ligands: ZN.1, ZN.2 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.546, B:C.548, B:C.555, B:C.565 ZN.4: 6 residues within 4Å: Chain B: C.504, H.506, C.510, C.516 Ligands: ZN.5, ZN.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.504, B:H.506, B:C.510, B:C.516 ZN.5: 6 residues within 4Å: Chain B: C.510, C.528, C.534, C.539 Ligands: ZN.4, ZN.6 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.510, B:C.528, B:C.534, B:C.539 ZN.6: 6 residues within 4Å: Chain B: C.504, C.518, C.528, C.532 Ligands: ZN.4, ZN.5 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.504, B:C.518, B:C.528, B:C.532 ZN.7: 4 residues within 4Å: Chain B: C.327, C.330, C.335, H.337 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.327, B:C.330, B:C.335, B:H.337 ZN.8: 4 residues within 4Å: Chain B: C.389, C.393, C.434, C.444 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:C.389, B:C.393, B:C.434, B:C.444

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.9: 18 residues within 4Å: Chain B: L.623, C.626, G.627, Y.628, K.671, V.672, S.673, Y.674, R.696, Y.697, N.699, H.700, Y.737, F.741, L.744, T.745, K.746, R.782 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:C.626, B:Y.628, B:Y.628, B:K.671, B:S.673, B:N.699, B:H.700, B:H.700, B:K.746 Water bridges: B:Y.674, B:Y.674

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Jiao, L. et al., Response to Comment on "Structural basis of histone H3K27 trimethylation by an active polycomb repressive complex 2". Science (2016)

Release Date

2017-04-19

Peptides

putative polycomb protein Eed: A
Putative uncharacterized protein,Zinc finger domain-containing protein: B
Peptide H3K27me3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
D

putative polycomb protein Eed

Putative uncharacterized protein,Zinc finger domain-containing protein

Peptide H3K27me3

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