- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-4-1-mer
- Ligands
- 4 x NI: NICKEL (II) ION(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
ZN.2: 4 residues within 4Å:- Chain A: C.256, H.262, C.328, C.330
4 PLIP interactions:4 interactions with chain A- Metal complexes: A:C.256, A:H.262, A:C.328, A:C.330
ZN.7: 4 residues within 4Å:- Chain B: C.256, H.262, C.328, C.330
4 PLIP interactions:4 interactions with chain B- Metal complexes: B:C.256, B:H.262, B:C.328, B:C.330
ZN.13: 4 residues within 4Å:- Chain C: C.256, H.262, C.328, C.330
4 PLIP interactions:4 interactions with chain C- Metal complexes: C:C.256, C:H.262, C:C.328, C:C.330
ZN.17: 4 residues within 4Å:- Chain D: C.256, H.262, C.328, C.330
4 PLIP interactions:4 interactions with chain D- Metal complexes: D:C.256, D:H.262, D:C.328, D:C.330
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x GOL: GLYCEROL(Non-functional Binders)
GOL.4: 3 residues within 4Å:- Chain A: E.45, Y.55, F.375
No protein-ligand interaction detected (PLIP)GOL.8: 4 residues within 4Å:- Chain B: E.45, Y.52, Y.55, F.375
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:E.45, B:E.45
GOL.9: 9 residues within 4Å:- Chain B: R.47, N.48, F.49, D.168, E.169, W.170, N.171, R.174, L.175
6 PLIP interactions:6 interactions with chain B- Hydrogen bonds: B:R.47, B:N.48, B:F.49, B:W.170, B:N.171, B:N.171
GOL.11: 4 residues within 4Å:- Chain C: E.45, Y.52, Y.55, F.375
2 PLIP interactions:2 interactions with chain C- Water bridges: C:E.44, C:E.45
GOL.15: 8 residues within 4Å:- Chain C: D.215, K.239, Y.295, Y.321, Q.324, A.325, I.363, H.365
4 PLIP interactions:4 interactions with chain C- Hydrogen bonds: C:D.215, C:K.239, C:Y.321
- Water bridges: C:V.326
- 3 x PPI: PROPANOIC ACID(Non-covalent)
PPI.5: 8 residues within 4Å:- Chain A: G.192, Y.197, Y.199, E.212, S.218, S.310, T.311, N.312
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:Y.197
- Hydrogen bonds: A:Y.199, A:N.312
PPI.10: 6 residues within 4Å:- Chain B: G.192, Y.197, Y.199, E.212, S.310, T.311
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Y.197
- Hydrogen bonds: B:S.310, B:N.312
- Water bridges: B:N.220
PPI.19: 8 residues within 4Å:- Chain D: G.192, Y.197, Y.199, E.212, S.218, S.310, T.311, N.312
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:Y.197
- Hydrogen bonds: D:Y.199, D:E.212, D:N.312
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawamura, A. et al., Highly selective inhibition of histone demethylases by de novo macrocyclic peptides. Nat Commun (2017)
- Release Date
- 2017-04-12
- Peptides
- Lysine-specific demethylase 4A: ABCD
CP2: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.50 Å
- Oligo State
- hetero-4-1-mer
- Ligands
- 4 x NI: NICKEL (II) ION(Non-covalent)
- 4 x ZN: ZINC ION(Non-covalent)
- 3 x CL: CHLORIDE ION(Non-functional Binders)
- 5 x GOL: GLYCEROL(Non-functional Binders)
- 3 x PPI: PROPANOIC ACID(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Kawamura, A. et al., Highly selective inhibition of histone demethylases by de novo macrocyclic peptides. Nat Commun (2017)
- Release Date
- 2017-04-12
- Peptides
- Lysine-specific demethylase 4A: ABCD
CP2: E - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
E