- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.34 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 10 x SR: STRONTIUM ION(Non-functional Binders)
- 15 x CL: CHLORIDE ION(Non-functional Binders)
CL.3: 4 residues within 4Å:- Chain A: D.9, V.10, L.11, D.14
Ligand excluded by PLIPCL.4: 1 residues within 4Å:- Chain A: D.380
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain B: G.110, L.111, T.280, Q.281
Ligand excluded by PLIPCL.11: 1 residues within 4Å:- Chain B: Q.382
Ligand excluded by PLIPCL.12: 2 residues within 4Å:- Chain B: G.126, Q.304
Ligand excluded by PLIPCL.19: 2 residues within 4Å:- Chain C: R.384, L.385
Ligand excluded by PLIPCL.25: 2 residues within 4Å:- Chain D: I.144, L.153
Ligand excluded by PLIPCL.28: 4 residues within 4Å:- Chain E: D.180, T.181, G.182, T.184
Ligand excluded by PLIPCL.29: 3 residues within 4Å:- Chain E: K.58, L.59, I.60
Ligand excluded by PLIPCL.30: 3 residues within 4Å:- Chain E: G.182, R.186, A.192
Ligand excluded by PLIPCL.32: 3 residues within 4Å:- Chain F: L.128, L.174, R.193
Ligand excluded by PLIPCL.33: 3 residues within 4Å:- Chain F: R.186, E.191, A.192
Ligand excluded by PLIPCL.34: 2 residues within 4Å:- Chain G: R.186, A.192
Ligand excluded by PLIPCL.36: 3 residues within 4Å:- Chain H: R.186, E.191, A.192
Ligand excluded by PLIPCL.37: 4 residues within 4Å:- Chain H: D.180, T.181, G.182, T.184
Ligand excluded by PLIP- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
MPD.5: 4 residues within 4Å:- Chain A: E.128, E.238, R.288, Q.304
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.238
MPD.6: 11 residues within 4Å:- Chain A: D.133, L.136, I.137, I.270, F.272, G.286, G.287, R.288, T.306, G.307, F.308
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.136, A:I.270, A:F.308
- Hydrogen bonds: A:D.133
MPD.7: 8 residues within 4Å:- Chain A: H.105, P.117, Q.119, L.283, R.285, S.309, M.310, D.311
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:Q.119, A:R.285, A:D.311
- Hydrogen bonds: A:Q.119
MPD.13: 7 residues within 4Å:- Chain B: P.117, Q.119, L.283, R.285, S.309, M.310, D.311
4 PLIP interactions:4 interactions with chain B- Hydrophobic interactions: B:Q.119, B:R.285, B:D.311
- Hydrogen bonds: B:Q.119
MPD.14: 6 residues within 4Å:- Chain B: E.260, S.262, Y.275, R.285
- Chain F: Y.106, Q.207
4 PLIP interactions:3 interactions with chain B, 1 interactions with chain F- Hydrogen bonds: B:E.260, B:S.262, B:R.285, F:Q.207
MPD.15: 7 residues within 4Å:- Chain B: V.20, L.21, S.146, L.147, D.148, Q.320, L.321
3 PLIP interactions:3 interactions with chain B- Hydrophobic interactions: B:V.20, B:L.21, B:D.148
MPD.20: 6 residues within 4Å:- Chain C: E.260, S.262, P.282, R.285
- Chain H: Y.106, Q.207
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:S.262, C:S.262
MPD.21: 8 residues within 4Å:- Chain C: P.117, Q.119, P.282, L.283, R.285, S.309, M.310, D.311
7 PLIP interactions:7 interactions with chain C- Hydrophobic interactions: C:P.117, C:D.311
- Hydrogen bonds: C:Q.119
- Water bridges: C:R.285, C:S.309, C:S.309, C:S.309
MPD.26: 8 residues within 4Å:- Chain D: V.103, H.105, P.117, Q.119, L.283, S.309, M.310, D.311
4 PLIP interactions:4 interactions with chain D- Hydrophobic interactions: D:V.103, D:P.117, D:Q.119
- Hydrogen bonds: D:Q.119
MPD.27: 2 residues within 4Å:- Chain D: Q.355, Y.357
1 PLIP interactions:1 interactions with chain D- Hydrogen bonds: D:Y.357
MPD.31: 6 residues within 4Å:- Chain D: E.260, S.262, Y.275, P.282
- Chain E: Q.207, K.211
2 PLIP interactions:2 interactions with chain D- Hydrogen bonds: D:S.262, D:S.262
MPD.35: 4 residues within 4Å:- Chain A: A.185, E.260, S.262
- Chain G: Q.207
1 PLIP interactions:1 interactions with chain G- Hydrogen bonds: G:Q.207
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stroek, R. et al., Kinetics and Structure of a Cold-Adapted Hetero-Octameric ATP Phosphoribosyltransferase. Biochemistry (2017)
- Release Date
- 2017-09-06
- Peptides
- ATP phosphoribosyltransferase regulatory subunit: ABCD
ATP phosphoribosyltransferase: EFGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.34 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 10 x SR: STRONTIUM ION(Non-functional Binders)
- 15 x CL: CHLORIDE ION(Non-functional Binders)
- 12 x MPD: (4S)-2-METHYL-2,4-PENTANEDIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Stroek, R. et al., Kinetics and Structure of a Cold-Adapted Hetero-Octameric ATP Phosphoribosyltransferase. Biochemistry (2017)
- Release Date
- 2017-09-06
- Peptides
- ATP phosphoribosyltransferase regulatory subunit: ABCD
ATP phosphoribosyltransferase: EFGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H