- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.31 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.2: 3 residues within 4Å:- Chain B: D.77, T.79, S.309
3 PLIP interactions:2 interactions with chain B, 1 Ligand-Water interactions- Metal complexes: B:D.77, B:T.79, H2O.5
MG.9: 3 residues within 4Å:- Chain F: D.77, T.79, S.309
3 PLIP interactions:2 interactions with chain F, 1 Ligand-Water interactions- Metal complexes: F:D.77, F:T.79, H2O.11
- 4 x PRT: PHOSPHORIBOSYL ATP(Non-covalent)
PRT.3: 18 residues within 4Å:- Chain C: K.31, G.32, R.33, I.34, G.93, D.95, V.96, A.114, C.116, D.177, V.178, V.179, D.180, T.181, G.182, N.183, T.184
- Chain D: R.74
13 PLIP interactions:12 interactions with chain C, 1 interactions with chain D- Hydrogen bonds: C:R.33, C:R.33, C:D.95, C:D.177, C:D.180, C:T.181, C:T.181, C:G.182, C:N.183, C:T.184, C:T.184
- Salt bridges: C:R.33, D:R.74
PRT.5: 18 residues within 4Å:- Chain D: G.32, R.33, I.34, G.93, D.95, V.96, A.114, C.116, D.177, V.178, V.179, D.180, T.181, G.182, N.183, T.184, V.199
- Ligands: TRS.7
18 PLIP interactions:18 interactions with chain D- Hydrogen bonds: D:G.32, D:R.33, D:R.33, D:R.33, D:D.95, D:D.180, D:D.180, D:T.181, D:G.182, D:N.183, D:T.184, D:T.184
- Water bridges: D:K.138, D:K.138, D:T.181, D:N.183
- Salt bridges: D:K.138
- pi-Cation interactions: D:R.33
PRT.10: 18 residues within 4Å:- Chain G: K.31, G.32, R.33, I.34, G.93, D.95, V.96, A.114, C.116, D.177, V.178, V.179, D.180, T.181, G.182, N.183, T.184
- Chain H: R.74
12 PLIP interactions:11 interactions with chain G, 1 interactions with chain H- Hydrogen bonds: G:R.33, G:R.33, G:D.95, G:D.177, G:D.180, G:T.181, G:G.182, G:N.183, G:T.184, G:T.184
- Salt bridges: G:R.33, H:R.74
PRT.12: 18 residues within 4Å:- Chain H: G.32, R.33, I.34, G.93, D.95, V.96, A.114, C.116, D.177, V.178, V.179, D.180, T.181, G.182, N.183, T.184, V.199
- Ligands: TRS.14
17 PLIP interactions:17 interactions with chain H- Hydrogen bonds: H:G.32, H:R.33, H:R.33, H:R.33, H:D.95, H:D.180, H:T.181, H:G.182, H:N.183, H:T.184, H:T.184
- Water bridges: H:K.138, H:K.138, H:T.181, H:N.183
- Salt bridges: H:K.138
- pi-Cation interactions: H:R.33
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
TRS.7: 5 residues within 4Å:- Chain C: R.74
- Chain D: G.161, S.162, E.164
- Ligands: PRT.5
4 PLIP interactions:3 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:S.162, D:S.162, D:E.164, C:R.74
TRS.14: 5 residues within 4Å:- Chain G: R.74
- Chain H: G.161, S.162, E.164
- Ligands: PRT.12
4 PLIP interactions:1 interactions with chain G, 3 interactions with chain H- Hydrogen bonds: G:R.74, H:S.162, H:S.162, H:E.164
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Alphey, M.S. et al., Catalytic and Anticatalytic Snapshots of a Short-Form ATP Phosphoribosyltransferase. Acs Catalysis (2018)
- Release Date
- 2018-10-24
- Peptides
- ATP phosphoribosyltransferase regulatory subunit: ABEF
ATP phosphoribosyltransferase: CDGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
BC
CD
DG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.31 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 4 x PRT: PHOSPHORIBOSYL ATP(Non-covalent)
- 2 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Alphey, M.S. et al., Catalytic and Anticatalytic Snapshots of a Short-Form ATP Phosphoribosyltransferase. Acs Catalysis (2018)
- Release Date
- 2018-10-24
- Peptides
- ATP phosphoribosyltransferase regulatory subunit: ABEF
ATP phosphoribosyltransferase: CDGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
BC
CD
DG
CH
D