- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
ADP.4: 13 residues within 4Å:- Chain C: R.33, I.34, G.93, D.95, V.96, A.114, Q.115, C.116, V.178, D.180, V.199
- Ligands: PRP.5, MG.6
5 PLIP interactions:5 interactions with chain C- Hydrogen bonds: C:R.33, C:D.95
- Salt bridges: C:R.33
- pi-Cation interactions: C:R.33, C:R.33
ADP.8: 13 residues within 4Å:- Chain D: K.31, R.33, I.34, A.75, G.93, D.95, A.114, Q.115, C.116, K.138, V.178, D.180
- Ligands: PRP.7
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:K.31, D:A.75, D:G.93, D:D.95
- Salt bridges: D:K.138
- pi-Cation interactions: D:R.33
ADP.12: 13 residues within 4Å:- Chain G: R.33, I.34, G.93, D.95, V.96, A.114, Q.115, C.116, V.178, D.180, V.199
- Ligands: PRP.13, MG.14
5 PLIP interactions:5 interactions with chain G- Hydrogen bonds: G:R.33, G:D.95
- Salt bridges: G:R.33
- pi-Cation interactions: G:R.33, G:R.33
ADP.16: 13 residues within 4Å:- Chain H: K.31, R.33, I.34, A.75, G.93, D.95, A.114, Q.115, C.116, K.138, V.178, D.180
- Ligands: PRP.15
6 PLIP interactions:6 interactions with chain H- Hydrogen bonds: H:K.31, H:A.75, H:G.93, H:D.95
- Salt bridges: H:K.138
- pi-Cation interactions: H:R.33
- 4 x PRP: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose(Non-covalent)
PRP.5: 11 residues within 4Å:- Chain C: R.33, E.164, V.178, V.179, D.180, T.181, G.182, N.183, T.184
- Ligands: ADP.4, MG.6
9 PLIP interactions:9 interactions with chain C- Hydrogen bonds: C:E.164, C:D.180, C:T.181, C:G.182, C:N.183, C:T.184, C:T.184
- Salt bridges: C:R.33, C:R.33
PRP.7: 11 residues within 4Å:- Chain D: R.33, E.164, D.177, V.178, V.179, D.180, T.181, G.182, N.183, T.184
- Ligands: ADP.8
11 PLIP interactions:11 interactions with chain D- Hydrogen bonds: D:E.164, D:D.180, D:T.181, D:T.181, D:G.182, D:N.183, D:T.184, D:T.184, D:T.184
- Salt bridges: D:R.33, D:R.33
PRP.13: 11 residues within 4Å:- Chain G: R.33, E.164, V.178, V.179, D.180, T.181, G.182, N.183, T.184
- Ligands: ADP.12, MG.14
8 PLIP interactions:8 interactions with chain G- Hydrogen bonds: G:E.164, G:D.180, G:T.181, G:G.182, G:N.183, G:T.184
- Salt bridges: G:R.33, G:R.33
PRP.15: 11 residues within 4Å:- Chain H: R.33, E.164, D.177, V.178, V.179, D.180, T.181, G.182, N.183, T.184
- Ligands: ADP.16
10 PLIP interactions:10 interactions with chain H- Hydrogen bonds: H:E.164, H:D.180, H:T.181, H:G.182, H:N.183, H:T.184, H:T.184, H:T.184
- Salt bridges: H:R.33, H:R.33
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Alphey, M.S. et al., Catalytic and Anticatalytic Snapshots of a Short-Form ATP Phosphoribosyltransferase. Acs Catalysis (2018)
- Release Date
- 2018-10-24
- Peptides
- ATP phosphoribosyltransferase regulatory subunit: ABEF
ATP phosphoribosyltransferase: CDGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
BC
CD
DG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.80 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 6 x CL: CHLORIDE ION(Non-functional Binders)
- 4 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)
- 4 x PRP: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose(Non-covalent)
- 2 x MG: MAGNESIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Alphey, M.S. et al., Catalytic and Anticatalytic Snapshots of a Short-Form ATP Phosphoribosyltransferase. Acs Catalysis (2018)
- Release Date
- 2018-10-24
- Peptides
- ATP phosphoribosyltransferase regulatory subunit: ABEF
ATP phosphoribosyltransferase: CDGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
BC
CD
DG
CH
D