- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.71 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 4 x PRP: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose(Non-covalent)
PRP.2: 12 residues within 4Å:- Chain C: R.33, E.164, V.178, V.179, D.180, T.181, G.182, N.183, T.184
- Chain D: R.57
- Ligands: ATP.3, MG.5
15 PLIP interactions:10 interactions with chain C, 5 interactions with chain D- Hydrogen bonds: C:E.164, C:D.180, C:T.181, C:G.182, C:N.183, C:T.184, C:T.184, C:T.184, D:R.57, D:R.74
- Salt bridges: C:R.33, C:R.33, D:R.57, D:R.57, D:R.57
PRP.7: 13 residues within 4Å:- Chain C: R.57, R.74
- Chain D: R.33, E.164, V.178, V.179, D.180, T.181, G.182, N.183, T.184
- Ligands: MG.4, ATP.8
15 PLIP interactions:11 interactions with chain D, 4 interactions with chain C- Hydrogen bonds: D:D.177, D:D.180, D:T.181, D:G.182, D:N.183, D:T.184, D:T.184, D:T.184
- Water bridges: D:E.164
- Salt bridges: D:R.33, D:R.33, C:R.57, C:R.57, C:R.57, C:R.74
PRP.11: 12 residues within 4Å:- Chain G: R.33, E.164, V.178, V.179, D.180, T.181, G.182, N.183, T.184
- Chain H: R.57
- Ligands: ATP.12, MG.14
15 PLIP interactions:5 interactions with chain H, 10 interactions with chain G- Hydrogen bonds: H:R.57, H:R.74, G:E.164, G:D.180, G:T.181, G:G.182, G:N.183, G:T.184, G:T.184, G:T.184
- Salt bridges: H:R.57, H:R.57, H:R.57, G:R.33, G:R.33
PRP.16: 13 residues within 4Å:- Chain G: R.57, R.74
- Chain H: R.33, E.164, V.178, V.179, D.180, T.181, G.182, N.183, T.184
- Ligands: MG.13, ATP.17
14 PLIP interactions:10 interactions with chain H, 4 interactions with chain G- Hydrogen bonds: H:D.177, H:D.180, H:T.181, H:G.182, H:N.183, H:T.184, H:T.184, H:T.184
- Salt bridges: H:R.33, H:R.33, G:R.57, G:R.57, G:R.57, G:R.74
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
ATP.3: 17 residues within 4Å:- Chain C: R.33, I.34, A.75, G.93, D.95, V.96, A.114, Q.115, C.116, K.138, V.178, D.180, V.199
- Chain D: R.74
- Ligands: PRP.2, MG.5, TRS.6
10 PLIP interactions:8 interactions with chain C, 2 interactions with chain D- Hydrogen bonds: C:R.33, C:A.75, C:D.95, D:R.74
- Salt bridges: C:R.33, C:K.138, C:K.138, D:R.74
- pi-Cation interactions: C:R.33, C:R.33
ATP.8: 16 residues within 4Å:- Chain C: R.74
- Chain D: R.33, A.75, G.93, D.95, V.96, A.114, Q.115, C.116, K.138, V.178, D.180, V.199
- Ligands: MG.4, PRP.7, TRS.9
9 PLIP interactions:8 interactions with chain D, 1 interactions with chain C- Hydrogen bonds: D:A.75, D:D.95, D:D.180
- Salt bridges: D:R.33, D:K.138, D:K.138, C:R.74
- pi-Cation interactions: D:R.33, D:R.33
ATP.12: 17 residues within 4Å:- Chain G: R.33, I.34, A.75, G.93, D.95, V.96, A.114, Q.115, C.116, K.138, V.178, D.180, V.199
- Chain H: R.74
- Ligands: PRP.11, MG.14, TRS.15
11 PLIP interactions:2 interactions with chain H, 9 interactions with chain G- Hydrogen bonds: H:R.74, G:R.33, G:A.75, G:D.95, G:D.180
- Salt bridges: H:R.74, G:R.33, G:K.138, G:K.138
- pi-Cation interactions: G:R.33, G:R.33
ATP.17: 16 residues within 4Å:- Chain G: R.74
- Chain H: R.33, A.75, G.93, D.95, V.96, A.114, Q.115, C.116, K.138, V.178, D.180, V.199
- Ligands: MG.13, PRP.16, TRS.18
8 PLIP interactions:1 interactions with chain G, 7 interactions with chain H- Salt bridges: G:R.74, H:R.33, H:K.138, H:K.138
- Hydrogen bonds: H:A.75, H:D.95
- pi-Cation interactions: H:R.33, H:R.33
- 4 x MG: MAGNESIUM ION(Non-functional Binders)
MG.4: 2 residues within 4Å:- Ligands: PRP.7, ATP.8
No protein-ligand interaction detected (PLIP)MG.5: 2 residues within 4Å:- Ligands: PRP.2, ATP.3
No protein-ligand interaction detected (PLIP)MG.13: 2 residues within 4Å:- Ligands: PRP.16, ATP.17
No protein-ligand interaction detected (PLIP)MG.14: 2 residues within 4Å:- Ligands: PRP.11, ATP.12
No protein-ligand interaction detected (PLIP)- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Alphey, M.S. et al., Catalytic and Anticatalytic Snapshots of a Short-Form ATP Phosphoribosyltransferase. Acs Catalysis (2018)
- Release Date
- 2018-10-24
- Peptides
- ATP phosphoribosyltransferase regulatory subunit: ABEF
ATP phosphoribosyltransferase: CDGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
BC
CD
DG
CH
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.71 Å
- Oligo State
- hetero-4-4-mer
- Ligands
- 6 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)
- 4 x PRP: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose(Non-covalent)
- 4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Non-covalent)
- 4 x MG: MAGNESIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Alphey, M.S. et al., Catalytic and Anticatalytic Snapshots of a Short-Form ATP Phosphoribosyltransferase. Acs Catalysis (2018)
- Release Date
- 2018-10-24
- Peptides
- ATP phosphoribosyltransferase regulatory subunit: ABEF
ATP phosphoribosyltransferase: CDGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BE
AF
BC
CD
DG
CH
D