SMTL ID : 5mns.6 (5 other biounits)

Structural and functional characterization of OleP in complex with 6DEB in sodium formate

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.62 Å

Oligo State

monomer

Ligands

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.1: 26 residues within 4Å: Chain A: V.93, L.94, H.101, R.105, F.112, I.157, A.244, G.245, T.248, Q.252, L.285, L.290, F.296, R.298, F.321, A.348, F.349, G.350, H.354, C.356, I.357, G.358, L.361, G.362, L.366 Ligands: DEB.2 17 PLIP interactions: 17 interactions with chain A, Hydrophobic interactions: A:F.112, A:I.157, A:A.244, A:Q.252, A:L.285, A:L.290, A:F.321, A:F.349, A:I.357, A:L.361, A:L.366 Hydrogen bonds: A:F.296 Salt bridges: A:H.101, A:R.105, A:R.298, A:H.354 Metal complexes: A:C.356

1 x DEB: 6-DEOXYERYTHRONOLIDE B(Non-covalent)

DEB.2: 9 residues within 4Å: Chain A: M.83, F.84, L.94, I.243, A.244, T.248, F.296, L.396 Ligands: HEM.1 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:M.83, A:I.243, A:A.244, A:T.248 Water bridges: A:E.89

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Parisi, G. et al., Substrate-induced conformational change in cytochrome P450 OleP. FASEB J. (2019)

Release Date

2018-02-28

Peptides

Cytochrome P-450: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
F

Cytochrome P-450

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