- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x QR8: (3~{R},4~{S},5~{R},6~{S},7~{S},9~{S},11~{R},12~{S},13~{R},14~{R})-3,5,7,9,11,13,14-heptamethyl-4,6,12-tris(oxidanyl)-1-oxacyclotetradecane-2,10-dione(Non-covalent)
- 21 x FMT: FORMIC ACID(Non-functional Binders)
FMT.3: 3 residues within 4Å:- Chain A: P.46, Y.47, G.48
Ligand excluded by PLIPFMT.4: 1 residues within 4Å:- Chain A: A.16
Ligand excluded by PLIPFMT.5: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPFMT.6: 4 residues within 4Å:- Chain A: D.133, V.136, A.137, R.376
Ligand excluded by PLIPFMT.7: 4 residues within 4Å:- Chain A: R.172, D.176, H.246, E.247
Ligand excluded by PLIPFMT.8: 1 residues within 4Å:- Chain A: P.141
Ligand excluded by PLIPFMT.9: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPFMT.10: 2 residues within 4Å:- Chain A: S.71, D.97
Ligand excluded by PLIPFMT.11: 4 residues within 4Å:- Chain A: R.105, H.355, C.356
- Ligands: FMT.12
Ligand excluded by PLIPFMT.12: 6 residues within 4Å:- Chain A: F.112, H.355, C.356, I.357, A.359
- Ligands: FMT.11
Ligand excluded by PLIPFMT.13: 6 residues within 4Å:- Chain A: V.145, R.172, V.250, K.392, L.400, E.401
Ligand excluded by PLIPFMT.14: 3 residues within 4Å:- Chain A: R.123, E.159
- Ligands: GOL.29
Ligand excluded by PLIPFMT.15: 3 residues within 4Å:- Chain A: E.159, E.213, D.214
Ligand excluded by PLIPFMT.16: 2 residues within 4Å:- Chain A: R.207, T.212
Ligand excluded by PLIPFMT.17: 4 residues within 4Å:- Chain A: A.279, E.282, E.283, N.344
Ligand excluded by PLIPFMT.18: 2 residues within 4Å:- Chain A: D.381, L.382
Ligand excluded by PLIPFMT.19: 1 residues within 4Å:- Chain A: E.188
Ligand excluded by PLIPFMT.20: 7 residues within 4Å:- Chain A: E.89, G.92, N.236, S.240
- Ligands: QR8.2, FMT.21, FMT.22
Ligand excluded by PLIPFMT.21: 7 residues within 4Å:- Chain A: P.88, E.89, M.178, Q.193
- Ligands: QR8.2, FMT.20, FMT.22
Ligand excluded by PLIPFMT.22: 8 residues within 4Å:- Chain A: P.88, E.89, G.92, A.95, F.296
- Ligands: QR8.2, FMT.20, FMT.21
Ligand excluded by PLIPFMT.23: 2 residues within 4Å:- Chain A: T.76, D.77
Ligand excluded by PLIP- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.24: 9 residues within 4Å:- Chain A: D.67, S.68, F.70, T.72, Q.96, D.97, P.98, A.353, H.354
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:S.68, A:T.72, A:T.72
- Water bridges: A:R.298
GOL.25: 5 residues within 4Å:- Chain A: R.266, L.337, D.338, F.339, H.340
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:L.337, A:F.339, A:H.340
GOL.26: 6 residues within 4Å:- Chain A: N.344, P.345, H.346, F.349, H.355, R.363
7 PLIP interactions:7 interactions with chain A- Hydrogen bonds: A:N.344, A:H.346, A:H.346, A:H.355, A:R.363, A:R.363
- Water bridges: A:E.282
GOL.27: 4 residues within 4Å:- Chain A: Q.96, D.100, H.228, E.233
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:D.100, A:H.228, A:E.233
GOL.28: 4 residues within 4Å:- Chain A: D.169, R.172, T.173, D.176
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:D.169, A:D.169
GOL.29: 5 residues within 4Å:- Chain A: M.120, R.123, V.156, E.159
- Ligands: FMT.14
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:R.123, A:R.123
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parisi, G. et al., Dissecting the Cytochrome P450 OleP Substrate Specificity: Evidence for a Preferential Substrate. Biomolecules (2020)
- Release Date
- 2020-10-21
- Peptides
- Cytochrome P-450: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
C
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x QR8: (3~{R},4~{S},5~{R},6~{S},7~{S},9~{S},11~{R},12~{S},13~{R},14~{R})-3,5,7,9,11,13,14-heptamethyl-4,6,12-tris(oxidanyl)-1-oxacyclotetradecane-2,10-dione(Non-covalent)
- 21 x FMT: FORMIC ACID(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parisi, G. et al., Dissecting the Cytochrome P450 OleP Substrate Specificity: Evidence for a Preferential Substrate. Biomolecules (2020)
- Release Date
- 2020-10-21
- Peptides
- Cytochrome P-450: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
C