- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x QR8: (3~{R},4~{S},5~{R},6~{S},7~{S},9~{S},11~{R},12~{S},13~{R},14~{R})-3,5,7,9,11,13,14-heptamethyl-4,6,12-tris(oxidanyl)-1-oxacyclotetradecane-2,10-dione(Non-covalent)
- 24 x FMT: FORMIC ACID(Non-functional Binders)
FMT.3: 1 residues within 4Å:- Chain A: T.308
Ligand excluded by PLIPFMT.4: 3 residues within 4Å:- Chain A: A.187, E.188, R.191
Ligand excluded by PLIPFMT.5: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPFMT.6: 2 residues within 4Å:- Chain A: Q.360
- Ligands: GOL.31
Ligand excluded by PLIPFMT.7: 3 residues within 4Å:- Chain A: H.351, H.355
- Ligands: FMT.8
Ligand excluded by PLIPFMT.8: 5 residues within 4Å:- Chain A: F.349, H.355, R.363
- Ligands: FMT.7, GOL.31
Ligand excluded by PLIPFMT.9: 4 residues within 4Å:- Chain A: A.114, E.118, R.121, Q.360
Ligand excluded by PLIPFMT.10: 4 residues within 4Å:- Chain A: E.282, R.341, E.342, R.343
Ligand excluded by PLIPFMT.11: 3 residues within 4Å:- Chain A: L.131, D.134, F.147
Ligand excluded by PLIPFMT.12: 3 residues within 4Å:- Chain A: L.337, D.338, F.339
Ligand excluded by PLIPFMT.13: 5 residues within 4Å:- Chain A: E.328, F.331, D.332, H.333, A.334
Ligand excluded by PLIPFMT.14: 4 residues within 4Å:- Chain A: G.66, D.67, S.68
- Ligands: GOL.32
Ligand excluded by PLIPFMT.15: 3 residues within 4Å:- Chain A: P.15, F.19, H.30
Ligand excluded by PLIPFMT.16: 4 residues within 4Å:- Chain A: E.38, S.41, R.42, W.53
Ligand excluded by PLIPFMT.17: 2 residues within 4Å:- Chain A: V.136, R.376
Ligand excluded by PLIPFMT.18: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPFMT.19: 6 residues within 4Å:- Chain A: P.88, E.89, M.178, Q.193
- Ligands: QR8.2, FMT.20
Ligand excluded by PLIPFMT.20: 4 residues within 4Å:- Chain A: N.236, S.240
- Ligands: QR8.2, FMT.19
Ligand excluded by PLIPFMT.21: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPFMT.22: 0 residues within 4Å:- (No contacts)
Ligand excluded by PLIPFMT.23: 3 residues within 4Å:- Chain A: P.99, R.103, H.228
Ligand excluded by PLIPFMT.24: 1 residues within 4Å:- Chain A: E.329
Ligand excluded by PLIPFMT.25: 2 residues within 4Å:- Chain A: T.185, A.187
Ligand excluded by PLIPFMT.26: 4 residues within 4Å:- Chain A: P.87, E.89, Q.190, Q.193
Ligand excluded by PLIP- 6 x GOL: GLYCEROL(Non-functional Binders)
GOL.27: 3 residues within 4Å:- Chain A: R.123, L.127, E.159
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:R.123
- Water bridges: A:R.123, A:E.159
GOL.28: 6 residues within 4Å:- Chain A: R.42, T.51, A.52, W.53, E.315, P.316
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:R.42, A:T.51, A:T.51, A:A.52
- Water bridges: A:T.51, A:T.51
GOL.29: 8 residues within 4Å:- Chain A: D.67, S.68, F.70, T.72, Q.96, D.97, P.98, H.354
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:S.68, A:T.72, A:T.72
GOL.30: 4 residues within 4Å:- Chain A: Q.96, D.100, H.228, E.233
4 PLIP interactions:4 interactions with chain A- Hydrogen bonds: A:Q.96, A:Q.96, A:D.100, A:H.228
GOL.31: 3 residues within 4Å:- Chain A: Q.360
- Ligands: FMT.6, FMT.8
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:Q.360
- Water bridges: A:E.282, A:E.282
GOL.32: 1 residues within 4Å:- Ligands: FMT.14
No protein-ligand interaction detected (PLIP)- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parisi, G. et al., Dissecting the Cytochrome P450 OleP Substrate Specificity: Evidence for a Preferential Substrate. Biomolecules (2020)
- Release Date
- 2020-10-21
- Peptides
- Cytochrome P-450: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 2.20 Å
- Oligo State
- monomer
- Ligands
- 1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)
- 1 x QR8: (3~{R},4~{S},5~{R},6~{S},7~{S},9~{S},11~{R},12~{S},13~{R},14~{R})-3,5,7,9,11,13,14-heptamethyl-4,6,12-tris(oxidanyl)-1-oxacyclotetradecane-2,10-dione(Non-covalent)
- 24 x FMT: FORMIC ACID(Non-functional Binders)
- 6 x GOL: GLYCEROL(Non-functional Binders)
- 1 x NA: SODIUM ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Parisi, G. et al., Dissecting the Cytochrome P450 OleP Substrate Specificity: Evidence for a Preferential Substrate. Biomolecules (2020)
- Release Date
- 2020-10-21
- Peptides
- Cytochrome P-450: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
B