SMTL ID : 5mpn.1

Crystal structure of CREBBP bromodomain complexed with FA26

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.23 Å

Oligo State

monomer

Ligands

2 x YE5: 1-[4-ethoxy-3-[3-(2~{H}-1,2,3,4-tetrazol-5-yl)phenyl]phenyl]ethanone(Non-covalent)

YE5.1: 8 residues within 4Å: Chain A: L.31, P.32, V.37, L.42, N.90, R.95, V.96 Ligands: EDO.3 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.32, A:V.37, A:V.96, A:V.96 Hydrogen bonds: A:N.90, A:R.95, A:R.95 YE5.2: 6 residues within 4Å: Chain A: M.17, E.21, Y.24, R.25, R.34, K.61 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:E.21, A:E.21, A:Y.24, A:Y.24, A:Y.24, A:Y.24 Hydrogen bonds: A:R.25 Water bridges: A:E.21, A:E.21

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.3: 2 residues within 4Å: Chain A: L.42 Ligands: YE5.1 No protein-ligand interaction detected (PLIP) EDO.4: 2 residues within 4Å: Chain A: P.9, E.10 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.10

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhu, J. et al., Binding Motifs in the CBP Bromodomain: An Analysis of 20 Crystal Structures of Complexes with Small Molecules. ACS Med Chem Lett (2018)

Release Date

2018-01-17

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein

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