SMTL ID : 5mzp.1

Crystal structure of stabilized A2A adenosine receptor A2AR-StaR2-bRIL in complex with caffeine at 2.1A resolution

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x NA: SODIUM ION(Non-functional Binders)

NA.1: 3 residues within 4Å: Chain A: D.61, S.100, N.385 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.61, A:S.100, A:N.385 Water bridges: A:D.61

1 x CFF: CAFFEINE(Non-covalent)

CFF.2: 8 residues within 4Å: Chain A: I.75, V.93, F.177, E.178, M.186, L.354, N.358, I.379 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.358 pi-Stacking: A:F.177

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 6 residues within 4Å: Chain A: A.82, H.84, G.85, M.149 Ligands: CLR.4, OLA.21 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:H.84 Water bridges: A:H.84 CLR.4: 6 residues within 4Å: Chain A: A.81, A.82, G.85, I.89 Ligands: CLR.3, OLC.28 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:A.81, A:I.89, A:I.89 Hydrogen bonds: A:A.82 Water bridges: A:Q.172 CLR.5: 8 residues within 4Å: Chain A: L.352, P.353, I.357, F.360, C.367, S.368, L.374 Ligands: OLA.10 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.352, A:I.357, A:F.360, A:L.374 Hydrogen bonds: A:S.368 Water bridges: A:S.368 CLR.6: 7 residues within 4Å: Chain A: I.356, C.359, F.360, F.363, C.364 Ligands: OLA.20, OLC.25 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:I.356, A:F.360, A:F.360, A:F.360, A:F.363, A:F.363

18 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.7: 8 residues within 4Å: Chain A: F.53, F.102, A.106, I.109, I.113, V.125, I.133, C.137 Ligand excluded by PLIP OLA.8: 6 residues within 4Å: Chain A: G.14, V.17, W.373, Y.376, V.380 Ligands: OLA.18 Ligand excluded by PLIP OLA.9: 2 residues within 4Å: Chain A: I.136 Ligands: OLA.16 Ligand excluded by PLIP OLA.10: 3 residues within 4Å: Chain A: W.373, L.377 Ligands: CLR.5 Ligand excluded by PLIP OLA.11: 6 residues within 4Å: Chain A: L.28, L.31, G.32, V.34, L.35, F.391 Ligand excluded by PLIP OLA.12: 1 residues within 4Å: Chain A: W.373 Ligand excluded by PLIP OLA.13: 2 residues within 4Å: Ligands: OLC.27, OLC.31 Ligand excluded by PLIP OLA.14: 4 residues within 4Å: Chain A: S.16, I.19, T.20, L.23 Ligand excluded by PLIP OLA.15: 5 residues within 4Å: Chain A: V.34, C.37, W.38, W.41, I.62 Ligand excluded by PLIP OLA.16: 6 residues within 4Å: Chain A: T.128, R.129, G.132, I.136, V.139 Ligands: OLA.9 Ligand excluded by PLIP OLA.17: 3 residues within 4Å: Chain A: V.388, I.392 Ligands: OLA.18 Ligand excluded by PLIP OLA.18: 8 residues within 4Å: Chain A: V.21, I.25, L.28, T.384, V.387, F.391 Ligands: OLA.8, OLA.17 Ligand excluded by PLIP OLA.19: 4 residues within 4Å: Chain A: A.341, I.342, G.345 Ligands: OLA.20 Ligand excluded by PLIP OLA.20: 9 residues within 4Å: Chain A: L.199, L.203, Y.206, F.210, A.341, A.344, G.345 Ligands: CLR.6, OLA.19 Ligand excluded by PLIP OLA.21: 6 residues within 4Å: Chain A: H.84, L.146, M.149 Ligands: CLR.3, OLA.23, OLA.24 Ligand excluded by PLIP OLA.22: 4 residues within 4Å: Chain A: Y.188, F.192, F.363 Ligands: OLC.25 Ligand excluded by PLIP OLA.23: 6 residues within 4Å: Chain A: H.84, M.149, L.150, G.151, N.153 Ligands: OLA.21 Ligand excluded by PLIP OLA.24: 6 residues within 4Å: Chain A: A.135, W.138, V.139, F.142 Ligands: OLA.21, OLC.29 Ligand excluded by PLIP

7 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.25: 3 residues within 4Å: Chain A: F.363 Ligands: CLR.6, OLA.22 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.363, A:F.363 OLC.26: 4 residues within 4Å: Chain A: S.15, I.19, L.23, T.77 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.23 Hydrogen bonds: A:S.15 OLC.27: 3 residues within 4Å: Ligands: OLA.13, OLC.28, OLC.31 No protein-ligand interaction detected (PLIP) OLC.28: 10 residues within 4Å: Chain A: V.66, L.67, P.70, T.74, F.79, C.80, Q.172 Ligands: CLR.4, OLC.27, OLC.31 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:V.66, A:L.67, A:P.70, A:F.79 Hydrogen bonds: A:C.80, A:Q.172, A:Q.172 Water bridges: A:C.80 OLC.29: 10 residues within 4Å: Chain A: Y.52, V.55, S.56, A.59, L.67, G.127, I.134, W.138, F.142 Ligands: OLA.24 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.55, A:A.59, A:L.67, A:I.134, A:W.138, A:W.138, A:W.138, A:F.142, A:F.142 Hydrogen bonds: A:G.127 OLC.30: 8 residues within 4Å: Chain A: C.37, V.40, W.41, Q.47, Y.52, V.55, A.59, L.63 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.41, A:V.55, A:A.59, A:L.63 Hydrogen bonds: A:Y.52, A:Y.52 OLC.31: 7 residues within 4Å: Chain A: V.66, T.74, T.77, F.79 Ligands: OLA.13, OLC.27, OLC.28 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.66, A:T.74

1 x TAR: D(-)-TARTARIC ACID(Non-covalent)

TAR.32: 6 residues within 4Å: Chain A: G.151, W.152, N.153, N.154, P.182, N.184 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:N.153, A:N.153, A:N.184 Water bridges: A:Q.157

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Cheng, R.K.Y. et al., Structures of Human A1 and A2A Adenosine Receptors with Xanthines Reveal Determinants of Selectivity. Structure (2017)

Release Date

2017-07-26

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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