- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-3-2-3-mer
- Ligands
- 3 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 8 x D12: DODECANE(Non-covalent)(Non-functional Binders)
D12.3: 10 residues within 4Å:- Chain A: P.9, I.10, W.13, I.17, M.20, T.495
- Chain B: W.895
- Ligands: D10.6, D10.15, DD9.16
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.9, A:W.13, A:W.13
D12.12: 11 residues within 4Å:- Chain A: F.4, R.8, F.11, V.14
- Chain B: G.440, V.443, G.444, M.447, C.887, A.890, L.891
2 PLIP interactions:1 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:A.890, A:F.11
D12.18: 4 residues within 4Å:- Ligands: DD9.14, D10.22, DD9.26, D10.27
No protein-ligand interaction detected (PLIP)D12.35: 13 residues within 4Å:- Chain B: F.4, R.8, F.11, V.14, I.18
- Chain C: M.447, C.887, A.890, L.891, E.893
- Ligands: DD9.23, D10.32, D10.48
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:L.891
D12.39: 7 residues within 4Å:- Chain B: I.10
- Chain C: F.885, S.894, W.895, S.896, F.1033
- Ligands: D10.17
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:W.895, C:W.895
D12.42: 7 residues within 4Å:- Chain A: W.895
- Chain C: P.9, I.10, W.13, I.17, M.20
- Ligands: D10.4
3 PLIP interactions:3 interactions with chain C- Hydrophobic interactions: C:W.13, C:W.13, C:I.17
D12.43: 10 residues within 4Å:- Chain B: L.25
- Chain C: V.454, P.455, F.458, F.459, I.879, V.883, C.887
- Ligands: DD9.21, D10.40
5 PLIP interactions:5 interactions with chain C- Hydrophobic interactions: C:V.454, C:F.458, C:F.458, C:F.458, C:F.459
D12.44: 6 residues within 4Å:- Chain C: F.386, F.388, I.472
- Ligands: DD9.37, DD9.45, DD9.46
No protein-ligand interaction detected (PLIP)- 26 x D10: DECANE(Non-covalent)(Non-functional Binders)
D10.4: 7 residues within 4Å:- Chain A: I.882, F.885, L.886, W.895
- Chain C: I.17
- Ligands: D10.5, D12.42
Ligand excluded by PLIPD10.5: 7 residues within 4Å:- Chain A: I.882, F.885, W.895, S.896, F.899, F.1033
- Ligands: D10.4
Ligand excluded by PLIPD10.6: 9 residues within 4Å:- Chain A: W.13, M.20, L.366, I.370, P.373, L.377, M.496
- Ligands: LMT.1, D12.3
Ligand excluded by PLIPD10.8: 8 residues within 4Å:- Chain A: V.454, A.457, F.458, F.459, G.460, R.468, I.472
- Ligands: DD9.10
Ligand excluded by PLIPD10.9: 4 residues within 4Å:- Chain A: A.385, F.386, G.387
- Ligands: DD9.14
Ligand excluded by PLIPD10.15: 9 residues within 4Å:- Chain A: I.17, L.21
- Chain B: I.882, F.885, L.886, W.895
- Ligands: D12.3, DD9.16, D10.19
Ligand excluded by PLIPD10.17: 7 residues within 4Å:- Chain B: P.9, I.10, W.13, I.17
- Chain C: W.895
- Ligands: D10.24, D12.39
Ligand excluded by PLIPD10.19: 10 residues within 4Å:- Chain B: L.881, I.882, F.885, W.895, S.896, F.899, M.902, F.1033
- Ligands: D10.15, DD9.16
Ligand excluded by PLIPD10.22: 8 residues within 4Å:- Chain B: V.454, A.457, F.458, R.468, I.472, V.475
- Ligands: D12.18, D10.27
Ligand excluded by PLIPD10.24: 6 residues within 4Å:- Chain B: W.13, M.20, L.366, I.370, M.496
- Ligands: D10.17
Ligand excluded by PLIPD10.25: 11 residues within 4Å:- Chain B: M.456, F.459, Y.467, F.556, A.873, Y.877, Q.928, L.931, L.932, I.935
- Ligands: D10.30
Ligand excluded by PLIPD10.27: 11 residues within 4Å:- Chain B: V.382, F.386, F.388, R.468, I.472, V.475, S.476, A.479
- Ligands: D12.18, D10.22, DD9.26
Ligand excluded by PLIPD10.28: 5 residues within 4Å:- Chain B: M.1, F.4, F.5
- Ligands: DD9.23, D10.36
Ligand excluded by PLIPD10.30: 15 residues within 4Å:- Chain B: V.452, P.455, M.456, F.459, L.876, Y.877, S.880, L.881, V.884, M.902, V.905, L.932, I.935, A.939
- Ligands: D10.25
Ligand excluded by PLIPD10.31: 13 residues within 4Å:- Chain B: I.27, L.28, L.30, V.32, N.298, L.300, I.337, V.340, V.341, F.380, I.390, M.395, M.398
Ligand excluded by PLIPD10.32: 12 residues within 4Å:- Chain B: I.15, I.18, I.19, A.22, A.381, V.382, A.385, L.480
- Ligands: DD9.20, DD9.23, DD9.33, D12.35
Ligand excluded by PLIPD10.36: 3 residues within 4Å:- Ligands: DD9.23, D10.28, D10.47
Ligand excluded by PLIPD10.38: 8 residues within 4Å:- Chain C: I.27, V.32, L.300, K.334, I.337, V.341, F.380, I.390
Ligand excluded by PLIPD10.40: 9 residues within 4Å:- Chain B: L.25
- Chain C: A.457, F.458, F.459, R.468
- Ligands: DD9.20, DD9.21, DD9.37, D12.43
Ligand excluded by PLIPD10.47: 3 residues within 4Å:- Ligands: DD9.23, D10.36, D10.48
Ligand excluded by PLIPD10.48: 7 residues within 4Å:- Chain C: Q.439, V.443, M.447, L.891
- Ligands: DD9.23, D12.35, D10.47
Ligand excluded by PLIPD10.49: 1 residues within 4Å:- Ligands: D10.50
Ligand excluded by PLIPD10.50: 6 residues within 4Å:- Chain C: M.1, F.4, F.5, I.15, I.487
- Ligands: D10.49
Ligand excluded by PLIPD10.51: 7 residues within 4Å:- Chain C: A.878, L.881, I.882, F.885, M.902
- Ligands: D10.52, D10.53
Ligand excluded by PLIPD10.52: 7 residues within 4Å:- Chain C: L.881, M.902, L.903, V.905, P.906
- Ligands: D10.51, D10.53
Ligand excluded by PLIPD10.53: 7 residues within 4Å:- Chain C: F.556, P.874, Y.877, A.878, L.881
- Ligands: D10.51, D10.52
Ligand excluded by PLIP- 14 x DD9: nonane(Non-functional Binders)(Non-covalent)
DD9.7: 9 residues within 4Å:- Chain A: I.19, A.22, L.25, A.26, A.381, V.382, A.384, A.385
- Ligands: DD9.13
No protein-ligand interaction detected (PLIP)DD9.10: 5 residues within 4Å:- Chain A: F.386, F.388, R.468, I.472
- Ligands: D10.8
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:F.386
DD9.13: 8 residues within 4Å:- Chain A: I.18, L.21, A.22, L.25
- Chain B: M.447, V.883
- Ligands: DD9.7, LMT.11
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:I.18
DD9.14: 3 residues within 4Å:- Ligands: D10.9, D12.18, DD9.26
No protein-ligand interaction detected (PLIP)DD9.16: 3 residues within 4Å:- Ligands: D12.3, D10.15, D10.19
No protein-ligand interaction detected (PLIP)DD9.20: 6 residues within 4Å:- Chain B: A.385
- Chain C: F.458
- Ligands: D10.32, DD9.33, D10.40, DD9.46
1 PLIP interactions:1 interactions with chain C- Hydrophobic interactions: C:F.458
DD9.21: 8 residues within 4Å:- Chain B: I.18, L.21, A.22, L.25
- Chain C: I.879, V.883
- Ligands: D10.40, D12.43
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:L.25
DD9.23: 8 residues within 4Å:- Chain B: F.4, F.11
- Ligands: D10.28, D10.32, D12.35, D10.36, D10.47, D10.48
No protein-ligand interaction detected (PLIP)DD9.26: 5 residues within 4Å:- Chain B: F.386
- Ligands: DD9.14, D12.18, D10.27, DD9.33
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:F.386
DD9.29: 7 residues within 4Å:- Chain A: L.21, L.25, L.28
- Chain B: S.875, A.878, I.879, I.882
3 PLIP interactions:2 interactions with chain B, 1 interactions with chain A- Hydrophobic interactions: B:I.879, B:I.882, A:L.28
DD9.33: 6 residues within 4Å:- Chain B: A.385, F.386
- Ligands: DD9.20, DD9.26, D10.32, DD9.46
1 PLIP interactions:1 interactions with chain B- Hydrophobic interactions: B:A.385
DD9.37: 7 residues within 4Å:- Chain C: A.457, F.458, R.468
- Ligands: D10.40, D12.44, DD9.45, DD9.46
2 PLIP interactions:2 interactions with chain C- Hydrophobic interactions: C:F.458, C:F.458
DD9.45: 4 residues within 4Å:- Chain C: F.386
- Ligands: DD9.37, D12.44, DD9.46
No protein-ligand interaction detected (PLIP)DD9.46: 6 residues within 4Å:- Chain C: F.458
- Ligands: DD9.20, DD9.33, DD9.37, D12.44, DD9.45
No protein-ligand interaction detected (PLIP)- 1 x PUY: PUROMYCIN(Non-covalent)
- 1 x HEX: HEXANE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Z. et al., An allosteric transport mechanism for the AcrAB-TolC Multidrug Efflux Pump. Elife (2017)
- Release Date
- 2017-04-12
- Peptides
- Multidrug efflux pump subunit AcrB: ABC
DARPin: DE
Multidrug efflux pump accessory protein AcrZ: FGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 3.20 Å
- Oligo State
- hetero-3-2-3-mer
- Ligands
- 3 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)
- 8 x D12: DODECANE(Non-covalent)(Non-functional Binders)
- 26 x D10: DECANE(Non-covalent)(Non-functional Binders)
- 14 x DD9: nonane(Non-functional Binders)(Non-covalent)
- 1 x PUY: PUROMYCIN(Non-covalent)
- 1 x HEX: HEXANE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Wang, Z. et al., An allosteric transport mechanism for the AcrAB-TolC Multidrug Efflux Pump. Elife (2017)
- Release Date
- 2017-04-12
- Peptides
- Multidrug efflux pump subunit AcrB: ABC
DARPin: DE
Multidrug efflux pump accessory protein AcrZ: FGH - SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
H - Membrane
-
We predict this structure to be a membrane protein.