SMTL ID : 5ncv.2 (1 other biounit)

Crystal Structure of Cytochrome c in complex with p-Methylphosphonatocalix[4]arene

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x HEC: HEME C(Covalent)

HEC.1: 27 residues within 4Å: Chain A: R.18, C.19, Q.21, C.22, H.23, V.33, G.34, P.35, L.37, I.40, S.45, G.46, Y.51, Y.53, T.54, N.57, W.64, M.69, Y.72, L.73, T.83, K.84, M.85, A.86, F.87, L.99, L.103 23 PLIP interactions: 23 interactions with chain A, Hydrophobic interactions: A:V.33, A:L.37, A:I.40, A:Y.51, A:W.64, A:L.73, A:M.85, A:F.87, A:L.103 Hydrogen bonds: A:G.46, A:Y.53, A:T.54, A:N.57, A:N.57, A:T.83, A:K.84 Water bridges: A:R.43, A:R.43, A:Q.47, A:T.83 Salt bridges: A:K.84 pi-Stacking: A:Y.72 Metal complexes: A:H.23

1 x 8TE: p-Methylphosphonatocalix[4]arene(Non-covalent)

8TE.2: 5 residues within 4Å: Chain A: R.18, T.74, G.88, K.91, K.92 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:K.91, A:K.91 Hydrogen bonds: A:R.18, A:R.18, A:K.78, A:K.91, A:K.91 pi-Cation interactions: A:K.91, A:K.91, A:K.91, A:K.91

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Alex, J.M. et al., Phosphonated Calixarene as a ""Molecular Glue"" for Protein Crystallization. Cryst.Growth Des. (2018)

Release Date

2018-03-14

Peptides

Cytochrome c iso-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cytochrome c iso-1

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