- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x XYL: Xylitol(Non-covalent)
XYL.2: 12 residues within 4Å:- Chain A: W.50, H.102, W.140, W.189, E.233, K.235, E.269, H.272, D.297, D.308, D.340
- Ligands: MG.1
9 PLIP interactions:9 interactions with chain A- Hydrogen bonds: A:H.102, A:E.233, A:K.235, A:H.272
- Water bridges: A:W.50, A:T.142, A:D.308, A:D.308, A:D.308
XYL.5: 13 residues within 4Å:- Chain B: W.50, H.102, W.140, W.189, E.233, K.235, E.269, H.272, D.297, D.308, D.340
- Chain C: F.61
- Ligands: MG.4
8 PLIP interactions:8 interactions with chain B- Hydrogen bonds: B:H.102, B:E.233, B:K.235, B:H.272, B:D.340
- Water bridges: B:W.50, B:D.340, B:D.340
XYL.8: 13 residues within 4Å:- Chain B: F.61
- Chain C: W.50, H.102, W.140, W.189, E.233, K.235, E.269, H.272, D.297, D.308, D.340
- Ligands: MG.7
8 PLIP interactions:8 interactions with chain C- Hydrogen bonds: C:H.102, C:E.233, C:K.235, C:H.272, C:D.340
- Water bridges: C:W.50, C:D.340, C:D.340
XYL.11: 13 residues within 4Å:- Chain A: F.61
- Chain D: W.50, H.102, W.140, W.189, E.233, K.235, E.269, H.272, D.297, D.308, D.340
- Ligands: MG.10
8 PLIP interactions:8 interactions with chain D- Hydrogen bonds: D:H.102, D:E.233, D:K.235, D:H.272
- Water bridges: D:W.50, D:T.142, D:D.308, D:D.308
- 3 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 4 residues within 4Å:- Chain A: S.112, I.113
- Chain C: G.417, E.418
7 PLIP interactions:4 interactions with chain A, 3 interactions with chain C- Hydrogen bonds: A:I.113
- Water bridges: A:E.114, A:E.114, A:R.166, C:K.414, C:G.417, C:G.417
SO4.6: 4 residues within 4Å:- Chain B: S.112, I.113
- Chain D: G.417, E.418
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain D- Hydrogen bonds: B:I.113
- Water bridges: B:E.114, B:R.166, D:G.417, D:E.418
SO4.9: 4 residues within 4Å:- Chain A: G.417, E.418
- Chain C: S.112, I.113
5 PLIP interactions:3 interactions with chain C, 2 interactions with chain A- Hydrogen bonds: C:I.113
- Water bridges: C:E.114, C:R.166, A:G.417, A:E.418
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, M. et al., Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography. Biochemistry (2017)
- Release Date
- 2017-11-01
- Peptides
- Xylose isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.75 Å
- Oligo State
- homo-tetramer
- Ligands
- 4 x MG: MAGNESIUM ION(Non-covalent)
- 4 x XYL: Xylitol(Non-covalent)
- 3 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, M. et al., Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography. Biochemistry (2017)
- Release Date
- 2017-11-01
- Peptides
- Xylose isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D