- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x SOR: sorbitol(Non-covalent)
SOR.3: 10 residues within 4Å:- Chain A: W.50, H.102, W.140, W.189, E.233, E.269, H.272, D.297, D.340
- Ligands: MN.1
4 PLIP interactions:4 interactions with chain A- Water bridges: A:T.142, A:W.189, A:E.269, A:E.269
SOR.7: 11 residues within 4Å:- Chain B: W.50, H.102, W.140, W.189, E.233, E.269, H.272, D.297, D.340
- Chain D: F.61
- Ligands: MN.5
4 PLIP interactions:4 interactions with chain B- Water bridges: B:T.142, B:W.189, B:E.269, B:E.269
SOR.11: 11 residues within 4Å:- Chain C: W.50, H.102, W.140, F.146, W.189, E.233, E.269, H.272, D.297, D.340
- Ligands: MN.9
4 PLIP interactions:4 interactions with chain C- Water bridges: C:T.142, C:T.142, C:E.269, C:H.272
SOR.16: 10 residues within 4Å:- Chain D: W.50, H.102, W.140, W.189, E.233, E.269, H.272, D.297, D.340
- Ligands: MN.14
6 PLIP interactions:6 interactions with chain D- Hydrogen bonds: D:E.233, D:D.340
- Water bridges: D:T.142, D:W.189, D:H.272, D:D.340
- 4 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 3 residues within 4Å:- Chain A: E.31, K.32, E.33
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.33
SO4.8: 5 residues within 4Å:- Chain A: G.417, E.418
- Chain B: S.112, I.113, E.114
3 PLIP interactions:2 interactions with chain A, 1 interactions with chain B- Water bridges: A:G.417, A:E.418
- Hydrogen bonds: B:I.113
SO4.12: 4 residues within 4Å:- Chain C: G.417, E.418
- Chain D: S.112, I.113
6 PLIP interactions:2 interactions with chain C, 4 interactions with chain D- Water bridges: C:G.417, C:E.418, D:E.114, D:R.166
- Hydrogen bonds: D:N.111, D:I.113
SO4.13: 2 residues within 4Å:- Chain C: S.393, G.394
2 PLIP interactions:2 interactions with chain C- Hydrogen bonds: C:G.394
- Water bridges: C:G.394
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, M. et al., Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography. Biochemistry (2017)
- Release Date
- 2017-11-01
- Peptides
- Xylose isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.80 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x MN: MANGANESE (II) ION(Non-covalent)
- 4 x SOR: sorbitol(Non-covalent)
- 4 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, M. et al., Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography. Biochemistry (2017)
- Release Date
- 2017-11-01
- Peptides
- Xylose isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D