- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x CO: COBALT (II) ION(Non-covalent)
- 4 x XUL: D-XYLULOSE(Non-covalent)
XUL.3: 14 residues within 4Å:- Chain A: W.50, H.102, W.140, W.189, E.233, K.235, E.269, H.272, D.297, D.308, D.340
- Chain C: F.61
- Ligands: CO.1, CO.2
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.102, A:K.235
- Water bridges: A:W.50, A:H.51, A:E.269, A:D.340
XUL.7: 14 residues within 4Å:- Chain B: W.50, H.102, W.140, W.189, E.233, K.235, E.269, H.272, D.297, D.308, D.340
- Chain D: F.61
- Ligands: CO.5, CO.6
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:H.102, B:K.235
- Water bridges: B:H.51, B:E.269
XUL.11: 14 residues within 4Å:- Chain A: F.61
- Chain C: W.50, H.102, W.140, W.189, E.233, K.235, E.269, H.272, D.297, D.308, D.340
- Ligands: CO.9, CO.10
6 PLIP interactions:6 interactions with chain C- Hydrogen bonds: C:H.102, C:K.235
- Water bridges: C:W.50, C:H.51, C:E.269, C:D.340
XUL.15: 15 residues within 4Å:- Chain B: F.61
- Chain D: W.50, H.102, W.140, F.146, W.189, E.233, K.235, E.269, H.272, D.297, D.308, D.340
- Ligands: CO.13, CO.14
4 PLIP interactions:4 interactions with chain D- Hydrogen bonds: D:H.102, D:K.235
- Water bridges: D:H.51, D:E.269
- 4 x HYP: 4-HYDROXYPROLINE(Non-covalent)
HYP.4: 10 residues within 4Å:- Chain A: K.265, A.287, V.288, G.291, M.292, L.293, G.329, G.331, F.332, V.333
13 PLIP interactions:12 interactions with chain A, 1 Ligand-Ligand interactions- Hydrogen bonds: A:G.291, A:L.293, A:G.331, A:V.333, P.4
- Water bridges: A:K.265, A:K.265, A:G.331, A:T.334, A:T.334, A:T.334, A:T.334
- Salt bridges: A:K.265
HYP.8: 10 residues within 4Å:- Chain B: K.265, A.287, V.288, G.291, M.292, L.293, G.329, G.331, F.332, V.333
11 PLIP interactions:10 interactions with chain B, 1 Ligand-Ligand interactions- Hydrogen bonds: B:G.291, B:L.293, B:G.331, B:V.333, P.8
- Water bridges: B:G.291, B:G.331, B:T.334, B:T.334, B:T.334
- Salt bridges: B:K.265
HYP.12: 10 residues within 4Å:- Chain C: K.265, A.287, V.288, G.291, M.292, L.293, G.329, G.331, F.332, V.333
15 PLIP interactions:13 interactions with chain C, 2 Ligand-Ligand interactions- Hydrogen bonds: C:G.291, C:L.293, C:G.331, C:G.331, C:V.333, P.12, P.12
- Water bridges: C:T.229, C:G.291, C:G.331, C:T.334, C:T.334, C:T.334, C:T.334
- Salt bridges: C:K.265
HYP.16: 10 residues within 4Å:- Chain D: K.265, A.287, V.288, G.291, M.292, L.293, G.329, G.331, F.332, V.333
14 PLIP interactions:12 interactions with chain D, 2 Ligand-Ligand interactions- Hydrogen bonds: D:G.291, D:L.293, D:G.331, D:G.331, D:V.333, P.16, P.16
- Water bridges: D:G.291, D:G.331, D:T.334, D:T.334, D:T.334, D:T.334
- Salt bridges: D:K.265
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, M. et al., Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography. Biochemistry (2017)
- Release Date
- 2017-11-01
- Peptides
- Xylose isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.93 Å
- Oligo State
- homo-tetramer
- Ligands
- 8 x CO: COBALT (II) ION(Non-covalent)
- 4 x XUL: D-XYLULOSE(Non-covalent)
- 4 x HYP: 4-HYDROXYPROLINE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Lee, M. et al., Metal Dependence of the Xylose Isomerase from Piromyces sp. E2 Explored by Activity Profiling and Protein Crystallography. Biochemistry (2017)
- Release Date
- 2017-11-01
- Peptides
- Xylose isomerase: ABCD
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
D