SMTL ID : 5nlx.1

A2A Adenosine receptor room-temperature structure determined by serial millisecond crystallography

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.14 Å

Oligo State

monomer

Ligands

3 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.1: 10 residues within 4Å: Chain A: V.66, L.67, P.70, F.71, T.74, F.79, I.89 Ligands: OLA.2, CLR.6, CLR.7 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.66, A:F.71 OLA.2: 4 residues within 4Å: Chain A: V.66 Ligands: OLA.1, CLR.7, CLR.8 No protein-ligand interaction detected (PLIP) OLA.3: 2 residues within 4Å: Ligands: CLR.6, CLR.7 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 6 residues within 4Å: Chain A: L.57, D.61, S.100, F.347, N.385, S.386 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.385 Water bridges: A:S.386

1 x ZMA: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol(Non-covalent)

ZMA.5: 16 residues within 4Å: Chain A: V.93, L.94, L.176, F.177, E.178, M.183, M.186, W.351, L.354, H.355, N.358, H.369, L.372, M.375, Y.376, I.379 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:L.94, A:W.351, A:L.354, A:L.372 Hydrogen bonds: A:N.358, A:N.358 Water bridges: A:F.177, A:H.369 Salt bridges: A:E.178 pi-Stacking: A:F.177, A:F.177, A:H.355

3 x CLR: CHOLESTEROL(Non-covalent)(Non-functional Binders)

CLR.6: 11 residues within 4Å: Chain A: L.67, F.71, F.79, A.81, A.82, G.85, F.88, I.89 Ligands: OLA.1, OLA.3, CLR.7 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.71, A:I.89 Hydrogen bonds: A:A.82 CLR.7: 4 residues within 4Å: Ligands: OLA.1, OLA.2, OLA.3, CLR.6 No protein-ligand interaction detected (PLIP) CLR.8: 1 residues within 4Å: Ligands: OLA.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Weinert, T. et al., Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons. Nat Commun (2017)

Release Date

2017-09-27

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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