- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- monomer
- Ligands
- 1 x NA: SODIUM ION(Non-functional Binders)
- 1 x ZMA: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol(Non-covalent)
- 15 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)
OLA.3: 12 residues within 4Å:- Chain A: L.23, I.30, V.66, P.70, I.73, T.74, T.77, F.79
- Ligands: OLA.7, OLA.16, OLA.17, OLC.20
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:T.74, A:T.77
OLA.4: 5 residues within 4Å:- Chain A: P.371, W.373, L.374, L.377
- Ligands: CLR.23
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:P.371, A:W.373, A:L.377
OLA.5: 10 residues within 4Å:- Chain A: F.53, F.102, L.105, A.106, I.109, D.110, I.113, V.125, I.133, C.137
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:F.102, A:A.106, A:I.109, A:I.109, A:I.133
OLA.6: 13 residues within 4Å:- Chain A: P.11, G.14, S.15, V.17, Y.18, V.21, I.25, S.76, L.372, W.373, Y.376, L.377, V.380
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:V.21, A:L.372, A:Y.376, A:L.377, A:V.380, A:V.380
- Water bridges: A:Y.376
OLA.7: 4 residues within 4Å:- Ligands: OLA.3, OLA.16, OLA.17, OLC.20
No protein-ligand interaction detected (PLIP)OLA.8: 9 residues within 4Å:- Chain A: L.28, L.31, G.32, V.34, L.35, W.38, V.387, F.391, I.408
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:L.28, A:L.31, A:V.387, A:F.391
OLA.9: 7 residues within 4Å:- Chain A: L.346, L.349, C.350, L.381, T.384, V.388, I.392
No protein-ligand interaction detected (PLIP)OLA.10: 8 residues within 4Å:- Chain A: I.30, V.34, C.37, W.38, W.41, I.62, V.66
- Ligands: OLB.19
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:V.34, A:W.41
- Hydrogen bonds: A:W.41
OLA.11: 12 residues within 4Å:- Chain A: L.196, L.199, L.200, L.203, Y.206, F.210, A.341, A.344, G.345, A.348, L.352
- Ligands: CLR.24
5 PLIP interactions:5 interactions with chain A- Hydrophobic interactions: A:L.196, A:L.200, A:L.203, A:Y.206, A:Y.206
OLA.12: 6 residues within 4Å:- Chain A: I.12, S.16, I.19, T.20, L.23
- Ligands: OLA.17
1 PLIP interactions:1 interactions with chain A- Hydrophobic interactions: A:I.19
OLA.13: 6 residues within 4Å:- Chain A: V.139, L.140, A.143, M.149, L.150
- Ligands: OLA.14
4 PLIP interactions:4 interactions with chain A- Hydrophobic interactions: A:V.139, A:A.143
- Water bridges: A:M.149
- Salt bridges: A:H.84
OLA.14: 9 residues within 4Å:- Chain A: H.84, V.139, F.142, A.143, L.146, M.149, L.150
- Ligands: OLA.13, OLA.15
No protein-ligand interaction detected (PLIP)OLA.15: 8 residues within 4Å:- Chain A: A.131, I.134, A.135, W.138, V.139, F.142
- Ligands: OLA.14, OLC.21
3 PLIP interactions:3 interactions with chain A- Hydrophobic interactions: A:W.138, A:F.142, A:F.142
OLA.16: 3 residues within 4Å:- Ligands: OLA.3, OLA.7, OLC.20
No protein-ligand interaction detected (PLIP)OLA.17: 10 residues within 4Å:- Chain A: P.11, I.12, S.15, I.19, L.23, I.73, T.77
- Ligands: OLA.3, OLA.7, OLA.12
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:I.19, A:T.77
- 2 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLB.18: 5 residues within 4Å:- Chain A: F.192, L.196, L.200, F.363
- Ligands: CLR.24
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:F.192, A:L.196, A:F.363, A:F.363, A:F.363
- Hydrogen bonds: A:F.363
OLB.19: 12 residues within 4Å:- Chain A: C.37, V.40, W.41, Q.47, Y.52, V.55, A.59, I.62, L.63
- Ligands: OLA.10, OLC.21, CLR.22
2 PLIP interactions:2 interactions with chain A- Hydrophobic interactions: A:V.55, A:A.59
- 2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
OLC.20: 13 residues within 4Å:- Chain A: V.66, L.67, P.70, F.71, T.74, F.79, C.80, I.89, Q.172
- Ligands: OLA.3, OLA.7, OLA.16, CLR.22
9 PLIP interactions:9 interactions with chain A- Hydrophobic interactions: A:V.66, A:L.67, A:P.70, A:F.71, A:F.71, A:T.74, A:F.79
- Hydrogen bonds: A:C.80, A:Q.172
OLC.21: 15 residues within 4Å:- Chain A: Y.52, V.55, S.56, A.59, L.63, F.92, G.127, T.128, A.130, A.131, I.134, W.138, F.142
- Ligands: OLA.15, OLB.19
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:V.55, A:L.63, A:W.138, A:W.138, A:F.142
- Hydrogen bonds: A:G.127
- 3 x CLR: CHOLESTEROL(Non-covalent)
CLR.22: 12 residues within 4Å:- Chain A: L.67, F.71, F.79, A.81, A.82, G.85, C.86, F.88, I.89, Q.172
- Ligands: OLB.19, OLC.20
7 PLIP interactions:7 interactions with chain A- Hydrophobic interactions: A:F.71, A:F.71, A:F.79, A:F.88, A:I.89, A:I.89
- Hydrogen bonds: A:A.82
CLR.23: 13 residues within 4Å:- Chain A: L.349, L.352, P.353, I.356, I.357, F.360, C.367, S.368, H.369, A.370, P.371, L.374
- Ligands: OLA.4
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.349, A:L.352, A:P.353, A:I.357, A:F.360, A:L.374
CLR.24: 12 residues within 4Å:- Chain A: F.191, F.192, L.196, L.200, L.352, I.356, C.359, F.360, F.363, C.364
- Ligands: OLA.11, OLB.18
6 PLIP interactions:6 interactions with chain A- Hydrophobic interactions: A:L.196, A:I.356, A:F.360, A:F.360, A:F.360, A:F.363
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weinert, T. et al., Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons. Nat Commun (2017)
- Release Date
- 2017-09-27
- Peptides
- Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.95 Å
- Oligo State
- monomer
- Ligands
- 1 x NA: SODIUM ION(Non-functional Binders)
- 1 x ZMA: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol(Non-covalent)
- 15 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)
- 2 x OLB: (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 2 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)
- 3 x CLR: CHOLESTEROL(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Weinert, T. et al., Serial millisecond crystallography for routine room-temperature structure determination at synchrotrons. Nat Commun (2017)
- Release Date
- 2017-09-27
- Peptides
- Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
A - Membrane
-
We predict this structure to be a membrane protein.