SMTL ID : 5nrw.1

Crystal structure of the human bromodomain of CREBBP bound to the inhibitor XDM4

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x 96N: 4-ethanoyl-3-ethyl-5-methyl-~{N}-(naphthalen-1-ylmethyl)-1~{H}-pyrrole-2-carboxamide(Non-covalent)

96N.1: 13 residues within 4Å: Chain A: L.31, P.32, F.33, Q.35, V.37, L.42, I.44, Y.47, Y.89, N.90, R.95, V.96, F.99 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.31, A:P.32, A:F.33, A:L.42, A:I.44, A:Y.47, A:Y.89, A:F.99 Hydrogen bonds: A:P.32, A:Q.35, A:N.90

4 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 0 residues within 4Å: (No contacts) 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.53 EDO.3: 2 residues within 4Å: Chain A: E.10, R.13 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.13 EDO.4: 2 residues within 4Å: Chain A: Y.24, R.34 No protein-ligand interaction detected (PLIP) EDO.5: 1 residues within 4Å: Chain A: R.25 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hugle, M. et al., Beyond the BET Family: Targeting CBP/p300 with 4-Acyl Pyrroles. Angew. Chem. Int. Ed. Engl. (2017)

Release Date

2017-08-16

Peptides

CREB-binding protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

CREB-binding protein

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