SMTL ID : 5o0p.2 (1 other biounit)

Deglycosylated Nogo Receptor with native disulfide structure 6

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: A.34, S.35, S.56, N.59 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.59 NAG.2: 3 residues within 4Å: Chain A: A.131, A.132, N.156 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.131, A:A.132 Water bridges: A:N.156, A:N.156 NAG.3: 1 residues within 4Å: Chain A: N.214 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.4: 2 residues within 4Å: Chain A: H.48, R.72 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.48, A:R.72, A:R.72

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.5: 5 residues within 4Å: Chain A: Y.11, S.19, F.40, W.64 Ligands: GOL.6 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:Y.11, A:Y.11, A:S.19, A:S.19 GOL.6: 5 residues within 4Å: Chain A: R.38, F.40, I.62, Q.86 Ligands: GOL.5 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.38, A:Q.86, A:Q.86 GOL.7: 7 residues within 4Å: Chain A: Y.209, Y.231, L.232, R.233, S.258, S.259, S.260 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Y.209, A:L.232, A:R.233

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pronker, M.F. et al., Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-10-18

Peptides

Reticulon-4 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Reticulon-4 receptor

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