SMTL ID : 5o0q.1 (3 other biounits)

Deglycosylated Nogo Receptor with native disulfide structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: A.34, S.35, S.56, N.59 No protein-ligand interaction detected (PLIP) NAG.2: 3 residues within 4Å: Chain A: A.131, A.132, N.156 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:A.132 Hydrogen bonds: A:A.131 Water bridges: A:N.156, A:N.156 NAG.3: 1 residues within 4Å: Chain A: N.214 No protein-ligand interaction detected (PLIP)

4 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 1 residues within 4Å: Chain A: D.236 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.235, A:D.236 Water bridges: A:D.236 PO4.5: 4 residues within 4Å: Chain A: R.176, G.177, H.179, D.201 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.177 Salt bridges: A:H.179 PO4.6: 2 residues within 4Å: Chain A: K.15, Q.37 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.37 Salt bridges: A:K.15 PO4.7: 6 residues within 4Å: Chain A: Y.209, L.232, R.233, S.258, S.259, S.260 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:L.232 Water bridges: A:R.233, A:R.233, A:N.235 Salt bridges: A:R.233

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.8: 3 residues within 4Å: Chain A: D.74, A.75, A.76 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.74 Water bridges: A:A.75

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.9: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pronker, M.F. et al., Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-10-18

Peptides

Reticulon-4 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Reticulon-4 receptor

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