SMTL ID : 5o0q.3 (3 other biounits)

Deglycosylated Nogo Receptor with native disulfide structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

monomer

Ligands

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 4 residues within 4Å: Chain A: A.34, S.35, S.56, N.59 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.34 Hydrogen bonds: A:N.59 NAG.2: 3 residues within 4Å: Chain A: A.131, A.132, N.156 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:A.131 Hydrogen bonds: A:N.156, A:N.156 NAG.3: 1 residues within 4Å: Chain A: N.214 1 PLIP interactions: 1 interactions with chain A Water bridges: A:N.214

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.4: 1 residues within 4Å: Chain A: D.236 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.236 PO4.5: 4 residues within 4Å: Chain A: R.176, G.177, H.179, D.201 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:G.177 Water bridges: A:R.176, A:R.176 Salt bridges: A:H.179

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.6: 5 residues within 4Å: Chain A: F.255, G.257, S.259, K.276 Ligands: GOL.7 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.259 GOL.7: 3 residues within 4Å: Chain A: Q.253, F.255 Ligands: GOL.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pronker, M.F. et al., Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-10-18

Peptides

Reticulon-4 receptor: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Reticulon-4 receptor

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