SMTL ID : 5o0r.1

Deglycosylated Nogo Receptor with native disulfide structure

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

homo-dimer

Ligands

5 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 5 residues within 4Å: Chain A: A.34, S.35, S.56, R.58, N.59 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.58, A:R.58 NAG.2: 3 residues within 4Å: Chain A: A.131, A.132, N.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.156 NAG.3: 2 residues within 4Å: Chain A: A.192, N.214 No protein-ligand interaction detected (PLIP) NAG.6: 4 residues within 4Å: Chain B: A.34, S.35, R.58, N.59 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:R.58 Water bridges: B:N.59 NAG.7: 5 residues within 4Å: Chain B: H.110, A.131, A.132, Q.134, N.156 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:A.132 Hydrogen bonds: B:Q.134

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 3 residues within 4Å: Chain A: Y.135, H.159, R.183 No protein-ligand interaction detected (PLIP) GOL.8: 2 residues within 4Å: Chain B: N.235, D.236 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.235

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.5: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP CL.9: 1 residues within 4Å: Chain B: I.62 Ligand excluded by PLIP CL.10: 4 residues within 4Å: Chain A: H.173, R.176 Chain B: D.148, E.172 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pronker, M.F. et al., Nogo Receptor crystal structures with a native disulfide pattern suggest a novel mode of self-interaction. Acta Crystallogr D Struct Biol (2017)

Release Date

2017-11-08

Peptides

Reticulon-4 receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Reticulon-4 receptor

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