SMTL ID : 5olg.1

Structure of the A2A-StaR2-bRIL562-ZM241385 complex at 1.86A obtained from in meso soaking experiments.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.87 Å

Oligo State

monomer

Ligands

1 x ZMA: 4-{2-[(7-amino-2-furan-2-yl[1,2,4]triazolo[1,5-a][1,3,5]triazin-5-yl)amino]ethyl}phenol(Non-covalent)

ZMA.1: 12 residues within 4Å: Chain A: L.95, F.178, E.179, M.187, W.352, L.355, H.356, N.359, H.370, L.373, M.376, I.380 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:L.95, A:W.352, A:L.355, A:L.373, A:M.376 Hydrogen bonds: A:N.359, A:N.359 Water bridges: A:F.178, A:E.179, A:H.370 Salt bridges: A:E.179 pi-Stacking: A:F.178, A:F.178

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 9 residues within 4Å: Chain A: F.72, F.80, A.82, A.83, G.86, F.89, I.90 Ligands: OLA.11, OLC.28 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:F.72, A:F.72, A:F.80, A:F.89, A:I.90, A:I.90 Hydrogen bonds: A:A.83 Water bridges: A:Q.173 CLR.3: 12 residues within 4Å: Chain A: L.350, L.353, P.354, I.358, F.361, C.368, S.369, A.371, L.375 Ligands: OLA.8, OLA.18, OLA.19 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.350, A:L.353, A:P.354, A:I.358, A:F.361, A:L.375 Hydrogen bonds: A:S.369 Water bridges: A:S.369 CLR.4: 8 residues within 4Å: Chain A: L.197, C.360, F.361, F.364, C.365 Ligands: OLA.7, OLA.8, OLA.9 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.197, A:F.361, A:F.361, A:F.361, A:F.364 Water bridges: A:F.364 CLR.5: 4 residues within 4Å: Chain A: W.374 Ligands: OLA.15, OLA.18, OLC.29 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.374, A:W.374, A:W.374, A:W.374, A:W.374

17 x OLA: OLEIC ACID(Non-functional Binders)(Non-covalent)(Covalent)

OLA.6: 3 residues within 4Å: Ligands: OLA.7, OLA.8, OLA.20 Ligand excluded by PLIP OLA.7: 4 residues within 4Å: Chain A: D.367 Ligands: CLR.4, OLA.6, OLA.8 Ligand excluded by PLIP OLA.8: 8 residues within 4Å: Chain A: F.361, D.367, C.368 Ligands: CLR.3, CLR.4, OLA.6, OLA.7, OLA.19 Ligand excluded by PLIP OLA.9: 3 residues within 4Å: Chain A: F.364 Ligands: CLR.4, OLA.16 Ligand excluded by PLIP OLA.10: 6 residues within 4Å: Chain A: C.38, V.41, W.42, V.56, A.60 Ligands: OLA.11 Ligand excluded by PLIP OLA.11: 13 residues within 4Å: Chain A: Y.53, V.56, S.57, A.60, L.64, L.68, F.93, I.135, W.139, F.143 Ligands: CLR.2, OLA.10, OLC.27 Ligand excluded by PLIP OLA.12: 6 residues within 4Å: Chain A: Y.189, F.193, A.194, V.198, P.199 Ligands: OLA.16 Ligand excluded by PLIP OLA.13: 7 residues within 4Å: Chain A: L.200, L.204, Y.207, F.211, K.339, A.342, G.346 Ligand excluded by PLIP OLA.14: 9 residues within 4Å: Chain A: V.50, F.54, F.103, L.106, A.107, I.110, D.111, V.126, I.134 Ligand excluded by PLIP OLA.15: 10 residues within 4Å: Chain A: G.15, S.16, V.22, L.373, Y.377, L.378, V.381, T.385 Ligands: CLR.5, OLC.29 Ligand excluded by PLIP OLA.16: 6 residues within 4Å: Chain A: Y.189, F.193, V.198, L.201 Ligands: OLA.9, OLA.12 Ligand excluded by PLIP OLA.17: 4 residues within 4Å: Chain A: I.13, S.17, T.21, L.24 Ligand excluded by PLIP OLA.18: 5 residues within 4Å: Chain A: S.369, H.370, P.372 Ligands: CLR.3, CLR.5 Ligand excluded by PLIP OLA.19: 3 residues within 4Å: Ligands: CLR.3, OLA.8, OLA.20 Ligand excluded by PLIP OLA.20: 2 residues within 4Å: Ligands: OLA.6, OLA.19 Ligand excluded by PLIP OLA.21: 10 residues within 4Å: Chain A: V.55, I.108, H.336, A.337, A.341, I.344, Y.394, R.397, I.398, R.399 Ligand excluded by PLIP OLA.22: 2 residues within 4Å: Chain A: M.14, S.17 Ligand excluded by PLIP

4 x SCN: THIOCYANATE ION(Non-functional Binders)

SCN.23: 4 residues within 4Å: Chain A: P.183, M.184, N.185, F.363 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:M.184, A:N.185 SCN.24: 2 residues within 4Å: Chain A: T.362, F.363 No protein-ligand interaction detected (PLIP) SCN.25: 3 residues within 4Å: Chain A: P.11, P.12, I.13 No protein-ligand interaction detected (PLIP) SCN.26: 4 residues within 4Å: Chain A: W.153, N.154, P.183, N.185 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.185

3 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)

OLC.27: 8 residues within 4Å: Chain A: A.132, I.135, A.136, W.139, F.143, A.144, M.150 Ligands: OLA.11 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.139, A:F.143 OLC.28: 2 residues within 4Å: Chain A: G.86 Ligands: CLR.2 No protein-ligand interaction detected (PLIP) OLC.29: 7 residues within 4Å: Chain A: V.18, V.22, I.26, T.385, V.388 Ligands: CLR.5, OLA.15 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.18, A:I.26, A:T.385, A:V.388

1 x CIT: CITRIC ACID(Non-functional Binders)

CIT.30: 4 residues within 4Å: Chain A: T.129, R.130, G.133, I.137 No protein-ligand interaction detected (PLIP)

1 x NA: SODIUM ION(Non-functional Binders)

NA.31: 4 residues within 4Å: Chain A: L.58, D.62, S.101, N.386 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:D.62, A:S.101, A:N.386 Water bridges: A:D.62, A:N.390

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rucktooa, P. et al., Towards high throughput GPCR crystallography: In Meso soaking of Adenosine A2A Receptor crystals. Sci Rep (2018)

Release Date

2018-01-17

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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