SMTL ID : 5olv.1

Structure of the A2A-StaR2-bRIL562-LUAA47070 complex at 2.0A obtained from in meso soaking experiments.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

1 x 9Y2: 4-(3,3-dimethylbutanoylamino)-3,5-bis(fluoranyl)-~{N}-(1,3-thiazol-2-yl)benzamide(Non-covalent)

9Y2.1: 15 residues within 4Å: Chain A: A.73, I.76, S.77, V.94, L.95, F.178, M.187, W.352, L.355, H.356, N.359, L.373, M.376, Y.377, I.380 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:I.76, A:F.178, A:F.178, A:L.373, A:Y.377 Hydrogen bonds: A:F.178, A:N.359 Water bridges: A:E.179 Halogen bonds: A:A.73

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: L.58, D.62, S.101, N.386 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.62, A:S.101, A:N.386 Water bridges: A:D.62

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.3: 5 residues within 4Å: Chain A: A.83, H.85, G.86, F.89 Ligands: OLA.28 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.89 CLR.4: 7 residues within 4Å: Chain A: F.72, F.80, A.82, A.83, G.86, I.90 Ligands: OLC.22 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:F.72, A:F.80, A:A.83, A:I.90 Hydrogen bonds: A:A.83 CLR.5: 9 residues within 4Å: Chain A: L.353, P.354, I.358, F.361, C.368, S.369, A.371, L.375 Ligands: OLA.7 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.353, A:P.354, A:I.358, A:F.361, A:L.375 Hydrogen bonds: A:S.369 CLR.6: 8 residues within 4Å: Chain A: L.197, I.357, C.360, F.361, F.364, C.365 Ligands: OLA.17, OLC.25 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.197, A:I.357, A:F.361, A:F.361, A:F.361, A:F.364

13 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.7: 3 residues within 4Å: Chain A: P.372, L.378 Ligands: CLR.5 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.372, A:L.378 OLA.8: 5 residues within 4Å: Chain A: F.54, A.107, D.111, V.126, I.134 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:A.107, A:I.134 OLA.9: 6 residues within 4Å: Chain A: I.26, L.29, T.385, V.388, V.389, F.392 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.26, A:L.29 OLA.10: 5 residues within 4Å: Chain A: G.15, V.22, W.374, Y.377, T.385 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.22, A:Y.377 OLA.11: 3 residues within 4Å: Chain A: I.137, A.144 Ligands: OLC.26 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.137, A:A.144 OLA.12: 5 residues within 4Å: Chain A: L.29, G.33, V.35, L.36, F.392 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.29, A:F.392 OLA.13: 1 residues within 4Å: Chain A: W.374 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.374, A:W.374 OLA.14: 3 residues within 4Å: Ligands: OLA.16, OLC.19, OLC.20 No protein-ligand interaction detected (PLIP) OLA.15: 4 residues within 4Å: Chain A: V.35, C.38, W.39, W.42 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.35, A:W.39, A:W.42, A:W.42, A:W.42 Hydrogen bonds: A:W.42 OLA.16: 7 residues within 4Å: Chain A: I.74, T.75, T.78, F.80 Ligands: OLA.14, OLC.20, OLC.22 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.74, A:T.78 OLA.17: 8 residues within 4Å: Chain A: L.197, L.200, Y.207, A.345, G.346, A.349 Ligands: CLR.6, OLC.29 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.197, A:A.349 OLA.27: 2 residues within 4Å: Chain A: S.17, T.21 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.21 OLA.28: 5 residues within 4Å: Chain A: H.85, M.150 Ligands: CLR.3, OLC.21, OLC.26 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.85

10 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.18: 4 residues within 4Å: Chain A: Y.189, L.197, F.364 Ligands: OLC.25 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.197 OLC.19: 6 residues within 4Å: Chain A: P.12, S.16, L.24, S.77, T.78 Ligands: OLA.14 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:L.24, A:T.78 Water bridges: A:S.16 OLC.20: 3 residues within 4Å: Ligands: OLA.14, OLA.16, OLC.22 No protein-ligand interaction detected (PLIP) OLC.21: 9 residues within 4Å: Chain A: A.136, W.139, F.143, A.144, L.147, L.151 Ligands: OLC.23, OLC.26, OLA.28 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.139, A:F.143, A:F.143 OLC.22: 10 residues within 4Å: Chain A: V.67, L.68, P.71, F.72, T.75, F.80, C.81 Ligands: CLR.4, OLA.16, OLC.20 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:V.67, A:L.68, A:P.71, A:F.72, A:T.75, A:F.80 Water bridges: A:C.81 OLC.23: 9 residues within 4Å: Chain A: Y.53, V.56, L.64, L.68, F.93, I.135, W.139, F.143 Ligands: OLC.21 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.56, A:L.64, A:F.93, A:W.139, A:W.139, A:F.143 OLC.24: 8 residues within 4Å: Chain A: C.38, V.41, W.42, Q.48, Y.53, V.56, A.60, L.64 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:W.42, A:L.64 Hydrogen bonds: A:Y.53 OLC.25: 5 residues within 4Å: Chain A: F.193, L.197, F.364 Ligands: CLR.6, OLC.18 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:L.197, A:F.364, A:F.364 Water bridges: A:D.367, A:D.367 OLC.26: 9 residues within 4Å: Chain A: H.85, V.140, M.150, L.151, G.152, N.154 Ligands: OLA.11, OLC.21, OLA.28 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.140 Hydrogen bonds: A:N.154 OLC.29: 4 residues within 4Å: Chain A: A.342, I.343, G.346 Ligands: OLA.17 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rucktooa, P. et al., Towards high throughput GPCR crystallography: In Meso soaking of Adenosine A2A Receptor crystals. Sci Rep (2018)

Release Date

2018-01-17

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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