SMTL ID : 5om1.1

Structure of the A2A-StaR2-bRIL562-Compound 4e complex at 2.1A obtained from in meso soaking experiments (1 hour soak).

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

1 x T4E: 4-(3-amino-5-phenyl-1,2,4-triazin-6-yl)-2-chlorophenol(Non-covalent)

T4E.1: 15 residues within 4Å: Chain A: A.73, I.76, V.94, L.95, F.178, E.179, M.187, W.352, L.355, H.356, N.359, M.376, I.380, A.383, H.384 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:I.76, A:L.95, A:F.178, A:F.178, A:W.352, A:L.355, A:L.355, A:I.380 Hydrogen bonds: A:N.359, A:N.359 Water bridges: A:A.69 Salt bridges: A:E.179 pi-Stacking: A:F.178

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 3 residues within 4Å: Chain A: D.62, S.101, N.386 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.62, A:S.101, A:N.386 Water bridges: A:D.62

14 x OLA: OLEIC ACID(Non-covalent)(Non-functional Binders)

OLA.3: 4 residues within 4Å: Chain A: S.17, I.20, T.21, L.24 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:T.21, A:L.24, A:L.24 OLA.8: 5 residues within 4Å: Chain A: T.75, F.80 Ligands: OLA.11, OLC.27, OLC.29 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.78 OLA.9: 7 residues within 4Å: Chain A: F.54, A.107, I.110, D.111, V.126, I.134, C.138 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.110, A:I.134 OLA.10: 7 residues within 4Å: Chain A: R.130, G.133, I.137, V.140, L.141 Ligands: OLC.24, OLC.28 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:I.137, A:I.137, A:L.141 OLA.11: 3 residues within 4Å: Ligands: OLA.8, OLC.21, OLC.27 No protein-ligand interaction detected (PLIP) OLA.12: 6 residues within 4Å: Chain A: T.385, V.388, V.389, F.392, Y.396 Ligands: OLA.13 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:T.385, A:V.388, A:V.389, A:F.392, A:Y.396 OLA.13: 2 residues within 4Å: Chain A: I.393 Ligands: OLA.12 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:I.393 OLA.14: 7 residues within 4Å: Chain A: L.200, L.204, Y.207, A.342, A.345, A.349 Ligands: OLA.15 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.200, A:Y.207, A:Y.207, A:A.342, A:A.345, A:A.349 OLA.15: 3 residues within 4Å: Chain A: G.346, L.353 Ligands: OLA.14 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.353 OLA.16: 5 residues within 4Å: Chain A: L.201, G.205, L.208, R.209, R.216 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:L.208, A:L.208, A:R.209 Water bridges: A:R.216 Salt bridges: A:R.209, A:R.216 OLA.17: 3 residues within 4Å: Chain A: C.38, W.39, W.42 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.39, A:W.39, A:W.42, A:W.42 Hydrogen bonds: A:W.42 OLA.18: 6 residues within 4Å: Chain A: L.29, L.32, G.33, L.36, V.388, F.392 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.388, A:F.392 OLA.19: 3 residues within 4Å: Chain A: W.374, L.378 Ligands: OLA.20 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.374, A:L.378 OLA.20: 5 residues within 4Å: Chain A: P.372, W.374, L.375 Ligands: CLR.6, OLA.19 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.374, A:L.375

4 x CLR: CHOLESTEROL(Non-covalent)

CLR.4: 5 residues within 4Å: Chain A: A.83, H.85, G.86 Ligands: CLR.5, OLC.25 No protein-ligand interaction detected (PLIP) CLR.5: 7 residues within 4Å: Chain A: F.72, A.82, A.83, G.86, I.90 Ligands: CLR.4, OLC.29 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.72, A:A.82, A:A.83, A:I.90 Hydrogen bonds: A:A.83 Water bridges: A:Q.173 CLR.6: 9 residues within 4Å: Chain A: L.350, L.353, P.354, I.358, F.361, C.368, S.369, L.375 Ligands: OLA.20 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.350, A:L.353, A:P.354, A:I.358, A:F.361, A:L.375 Hydrogen bonds: A:S.369 CLR.7: 8 residues within 4Å: Chain A: L.197, L.353, I.357, C.360, F.361, F.364, C.365 Ligands: OLC.23 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.197, A:L.353, A:I.357, A:F.361, A:F.361, A:F.361, A:F.364

12 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.21: 7 residues within 4Å: Chain A: P.12, S.16, I.20, L.24, S.77, T.78 Ligands: OLA.11 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.20, A:L.24, A:T.78 Hydrogen bonds: A:S.16 OLC.22: 8 residues within 4Å: Chain A: P.12, G.15, S.16, V.22, L.373, W.374, Y.377, L.378 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.22, A:Y.377 Hydrogen bonds: A:Y.377 Water bridges: A:W.374 OLC.23: 5 residues within 4Å: Chain A: F.193, F.364, P.366 Ligands: CLR.7, OLC.26 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.193, A:F.364, A:F.364, A:F.364 OLC.24: 7 residues within 4Å: Chain A: H.85, M.150, L.151, G.152, N.154 Ligands: OLA.10, OLC.25 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:L.151 Hydrogen bonds: A:N.154 OLC.25: 6 residues within 4Å: Chain A: H.85, L.147, M.150 Ligands: CLR.4, OLC.24, OLC.32 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.147 Hydrogen bonds: A:H.85 Water bridges: A:H.85 Salt bridges: A:H.85 OLC.26: 7 residues within 4Å: Chain A: Y.189, F.193, L.197, V.198, L.201, F.364 Ligands: OLC.23 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:F.193, A:L.197, A:V.198, A:L.201 Hydrogen bonds: A:Y.189 Water bridges: A:Y.189 OLC.27: 3 residues within 4Å: Ligands: OLA.8, OLA.11, OLC.29 No protein-ligand interaction detected (PLIP) OLC.28: 3 residues within 4Å: Chain A: R.130, I.137 Ligands: OLA.10 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.137 Hydrogen bonds: A:R.130 OLC.29: 10 residues within 4Å: Chain A: V.67, L.68, P.71, F.72, T.75, F.80, C.81 Ligands: CLR.5, OLA.8, OLC.27 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:V.67, A:L.68, A:P.71, A:F.72, A:T.75, A:F.80 Hydrogen bonds: A:C.81, A:C.81 Water bridges: A:Q.173, A:Q.173 OLC.30: 10 residues within 4Å: Chain A: Y.53, L.64, L.68, F.93, G.128, I.135, W.139, F.143 Ligands: OLC.31, OLC.32 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.64, A:F.93, A:W.139, A:W.139, A:W.139, A:F.143 Hydrogen bonds: A:G.128 OLC.31: 8 residues within 4Å: Chain A: C.38, V.41, W.42, Y.53, V.56, A.60, L.64 Ligands: OLC.30 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:V.56, A:A.60, A:L.64 Hydrogen bonds: A:Y.53 OLC.32: 6 residues within 4Å: Chain A: I.135, A.136, W.139, F.143 Ligands: OLC.25, OLC.30 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.135, A:A.136, A:F.143, A:F.143

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.33: 3 residues within 4Å: Chain A: R.397, I.398, R.399 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rucktooa, P. et al., Towards high throughput GPCR crystallography: In Meso soaking of Adenosine A2A Receptor crystals. Sci Rep (2018)

Release Date

2018-01-17

Peptides

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a

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