SMTL ID : 5r89.1

PanDDA analysis group deposition INTERLEUKIN-1 BETA -- Fragment Z217038356 in complex with INTERLEUKIN-1 BETA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.65 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: A.1, P.2, V.3, K.92, K.93 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:V.3, A:K.93 SO4.2: 2 residues within 4Å: Chain A: E.96, R.98 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.96 Salt bridges: A:R.98

1 x S7D: 1-[(2~{S})-2-methylmorpholin-4-yl]-2-pyrazol-1-yl-ethanone(Non-covalent)

S7D.3: 8 residues within 4Å: Chain A: Y.24, E.25, L.26, K.74, T.79, L.80, P.131, V.132 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:T.79 Hydrogen bonds: A:L.26

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nichols, C. et al., Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem. (2020)

Release Date

2020-04-22

Peptides

Interleukin-1 beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interleukin-1 beta

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