SMTL ID : 5r8f.1

PanDDA analysis group deposition INTERLEUKIN-1 BETA -- Fragment Z2377835233 in complex with INTERLEUKIN-1 BETA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

monomer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: A.1, P.2, V.3, K.92, K.93 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:V.3, A:K.93 Water bridges: A:K.94 SO4.2: 2 residues within 4Å: Chain A: E.96, R.98 2 PLIP interactions: 2 interactions with chain A Water bridges: A:E.96 Salt bridges: A:R.98

1 x K3Y: 1-methyl-3-[(3R)-piperidin-3-yl]-1H-pyrazole-4-carboxamide(Non-covalent)

K3Y.3: 8 residues within 4Å: Chain A: E.37, Q.38, Q.39, V.40, V.41, L.62, K.63, E.64 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:V.41, A:K.63 Water bridges: A:K.65 pi-Cation interactions: A:K.65

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nichols, C. et al., Mining the PDB for Tractable Cases Where X-ray Crystallography Combined with Fragment Screens Can Be Used to Systematically Design Protein-Protein Inhibitors: Two Test Cases Illustrated by IL1 beta-IL1R and p38 alpha-TAB1 Complexes. J.Med.Chem. (2020)

Release Date

2020-04-22

Peptides

Interleukin-1 beta: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Interleukin-1 beta

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