5sao.1 | SWISS-MODEL Template Library

Modelling
Repository
Tools
Documentation
Log in
Create Account

SMTL ID : 5sao.1

Endothiapepsin in complex with compound FU58-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.00 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:

6 residues within 4Å:

Chain A: V.361, P.363, Y.366, A.401, S.418, K.419

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:Y.366, A:S.418, A:K.419, A:K.419
Water bridges: A:V.361

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2:	9 residues within 4Å: Chain A: S.271, I.272, T.273, A.358, R.359, I.360, F.416, A.417, S.418 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.271, A:T.273, A:R.359, A:S.418 Water bridges: A:S.271, A:R.359
EDO.3:	6 residues within 4Å: Chain A: T.301, S.302, I.303, P.317, T.319, V.320 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.302, A:T.319, A:T.319 Water bridges: A:T.301

1 x ZSD: 6-[(8R)-2-({[(3,5-dimethyl-1,2-oxazol-4-yl)methyl](methyl)amino}methyl)-6,7-dihydropyrazolo[1,5-a]pyrazin-5(4H)-yl]pyrimidin-4-amine(Non-covalent)

ZSD.4:

18 residues within 4Å:

Chain A: I.99, D.104, A.105, D.122, D.124, G.126, Y.168, G.169, D.170, S.172, S.204, F.205, D.208, I.211, L.214, D.308, G.310, T.311

8 PLIP interactions:

8 interactions with chain A

Hydrophobic interactions: A:Y.168, A:F.205, A:D.208
Hydrogen bonds: A:D.122, A:G.310, A:T.311
Water bridges: A:D.100
Salt bridges: A:D.208

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Metz, A. et al., Frag4Lead: growing crystallographic fragment hits by catalog using fragment-guided template docking. Acta Crystallogr D Struct Biol (2021)

Release Date

2021-09-01

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

Related Entries With Identical Sequence

5hct.1 | 5r1t.1 | 5r1u.1 | 5r1v.1 | 5r1w.1 | 5r1x.1 | 5r1y.1 | 5r1z.1 | 5r20.1 | 5r21.1 | 5r22.1 | 5r23.1 | 5r24.1 | 5r25.1 | 5r26.1 | 5r27.1 | 5r28.1 | 5r29.1 | 5r2a.1 | 5r2b.1 | 5r2c.1 | 5r2d.1 | 5r2e.1 | 5r2f.1 | 5r2g.1 | 5r2h.1 | 5r2i.1 | 5r2j.1 | 5r2k.1 | 5r2l.1 more...less...

5r2m.1 | 5r2n.1 | 5r2o.1 | 5r2p.1 | 5r2q.1 | 5r2r.1 | 5r2s.1 | 5r2t.1 | 5r2u.1 | 5r2v.1 | 5r2w.1 | 5r2x.1 | 5r2y.1 | 5r2z.1 | 5r30.1 | 5r31.1 | 5r32.1 | 5r33.1 | 5r34.1 | 5r35.1 | 5r36.1 | 5r37.1 | 5r38.1 | 5r39.1 | 5r3a.1 | 5r3b.1 | 5r3c.1 | 5r3d.1 | 5r3e.1 | 5r3f.1 | 5r3g.1 | 5r3h.1 | 5r3i.1 | 5r3j.1 | 5r3k.1 | 5r3l.1 | 5r3m.1 | 5r3n.1 | 5r3o.1 | 5r3p.1 | 5r3q.1 | 5r3r.1 | 5r3s.1 | 5r3t.1 | 5r3u.1 | 5r3v.1 | 5r3w.1 | 5r3x.1 | 5r3y.1 | 5r3z.1 | 5r40.1 | 5r41.1 | 5rbo.1 | 5rbp.1 | 5rbq.1 | 5rbr.1 | 5rbs.1 | 5rbt.1 | 5rbu.1 | 5rbv.1 | 5rbw.1 | 5rbx.1 | 5rby.1 | 5rbz.1 | 5rc0.1 | 5rc1.1 | 5rc2.1 | 5rc3.1 | 5rc4.1 | 5rc5.1 | 5rc6.1 | 5rc7.1 | 5rc8.1 | 5rc9.1 | 5rca.1 | 5rcb.1 | 5rcc.1 | 5rcd.1 | 5rce.1 | 5rcf.1 | 5rcg.1 | 5rch.1 | 5rci.1 | 5rcj.1 | 5rck.1 | 5rcl.1 | 5rcm.1 | 5rcn.1 | 5rco.1 | 5rcp.1 | 5rcq.1 | 5rcr.1 | 5rcs.1 | 5rct.1 | 5rcu.1 | 5rcv.1 | 5rcw.1 | 5rcx.1 | 5rcy.1 | 5rcz.1 | 5rd0.1 | 5rd1.1 | 5rd2.1 | 5rd3.1 | 5rd4.1 | 5rd5.1 | 5rd6.1 | 5rd7.1 | 5rd8.1 | 5rd9.1 | 5rda.1 | 5rdb.1 | 5rdc.1 | 5rdd.1 | 5rde.1 | 5rdf.1 | 5rdg.1 | 5rdh.1 | 5rdi.1 | 5rdj.1 | 5rdk.1 | 5rdl.1 | 5rdm.1 | 5rdn.1 | 5rdo.1 | 5rdp.1 | 5rdq.1 | 5rdr.1 | 5rds.1 | 5rdt.1 | 5rdu.1 | 5rdv.1 | 5rdw.1 | 5rdx.1 | 5rdy.1 | 5rdz.1 | 5re0.1 | 5re1.1 | 5re2.1 | 5re3.1 | 5sak.1 | 5sal.1 | 5sam.1 | 5san.1 | 5sap.1 | 5saq.1 | 5sar.1 | 5sas.1 | 5sat.1 | 6zz2.1 | 7adg.1 | 7qlt.1 | 7qlu.1 | 7qlv.1 | 7qlw.1 | 7qlx.1 | 7qly.1 | 7qlz.1 | 7qm0.1 | 7qm1.1 | 7qm3.1 | 7qm4.1 | 7qm5.1 | 7qm6.1 | 7qm7.1 | 7qm8.1 | 7qm9.1 | 7qma.1 | 7qmb.1 | 7qmc.1 | 7qmd.1 | 7qme.1 | 7qmf.1 | 7qmg.1 | 7qmh.1 | 7qmi.1 | 7qmj.1 | 7qmk.1 | 7qml.1 | 7qmm.1 | 7qmn.1 | 7qmo.1 | 7qmp.1 | 7qmq.1 | 7qmr.1 | 7qms.1 | 7qmt.1 | 7qmu.1 | 7qmv.1 | 7qmw.1 | 7qmx.1 | 7qmy.1 | 7qmz.1 | 7qn0.1 | 7qn1.1 | 7qn2.1 | 7qn3.1 | 7qn4.1 | 8c6p.1 | 8c6q.1 | 8c6s.1 | 8c6t.1 | 8c70.1 | 8c71.1 | 8c72.1 | 8c74.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
Schwede Group
Contact Us
Terms of use
Back to the Top