SMTL ID : 8c6t.1

Fragment screening hit IV bound to endothiapepsin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: V.361, P.363, Y.366, A.401, S.418, K.419 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.419, A:K.419 Water bridges: A:V.361

2 x TV6: 1-[3,5-bis(chloranyl)phenoxy]propan-2-amine(Non-covalent)

TV6.2: 4 residues within 4Å: Chain A: T.95, P.255, G.256, T.257 1 PLIP interactions: 1 interactions with chain A Halogen bonds: A:G.256 TV6.3: 8 residues within 4Å: Chain A: G.126, Y.168, G.169, D.308, T.311, Y.315, I.389, I.393 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:Y.168, A:I.389, A:I.393 Hydrogen bonds: A:G.126

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Buhrmann, M. et al., Fragtory: Pharmacophore-Focused Design, Synthesis, and Evaluation of an sp 3 -Enriched Fragment Library. J.Med.Chem. (2023)

Release Date

2023-05-24

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Endothiapepsin

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