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SMTL ID : 6zz2.1

Cocktail experiment E: fragments 52, 58, and 63 at 90 mM concentration in complex with Endothiapepsin

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.15 Å

Oligo State

monomer

Ligands

1 x F63: N-methyl-1-[5-(pyridin-3-yloxy)furan-2-yl]methanamine(Non-covalent)

F63.1:

13 residues within 4Å:

Chain A: D.122, D.124, Y.168, G.169, D.170, S.172, S.204, F.205, D.208, I.211, L.214, G.310, T.311

5 PLIP interactions:

5 interactions with chain A

Hydrophobic interactions: A:F.205, A:I.211
Hydrogen bonds: A:D.170
Water bridges: A:G.169, A:T.311

4 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.2:	7 residues within 4Å: Chain A: D.170, G.171, S.172, S.202, S.203, S.204, F.205 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.202, A:S.203, A:S.204, A:S.204
DMS.3:	6 residues within 4Å: Chain A: S.322, W.325, A.326, A.331, K.332, Y.340 No protein-ligand interaction detected (PLIP)
DMS.4:	4 residues within 4Å: Chain A: S.302, I.303, D.304, N.392 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.304 Water bridges: A:N.392 Salt bridges: A:D.304
DMS.5:	2 residues within 4Å: Chain A: P.115, A.116 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.116

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.6:

6 residues within 4Å:

Chain A: V.361, P.363, Y.366, A.401, S.418, K.419

5 PLIP interactions:

5 interactions with chain A

Hydrogen bonds: A:V.361, A:S.418, A:K.419, A:K.419
Water bridges: A:V.361

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Hassaan, E. et al., Cocktail experiment E: fragments 52, 58, and 63 at 90 mM concentration in complex with Endothiapepsin. To Be Published

Release Date

2021-08-11

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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