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SMTL ID : 7qm4.1

Endothiapepsin in complex with compound TL00150 in 8% DMSO at 298 K

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x U1H: [4-(trifluoromethyl)phenyl]methanamine(Non-covalent)

U1H.1:

12 residues within 4Å:

Chain A: D.124, G.126, G.169, F.283, D.308, G.310, T.311, I.389, I.391, I.393
Ligands: DMS.3, DMS.4

2 PLIP interactions:

2 interactions with chain A

Hydrophobic interactions: A:F.283
Hydrogen bonds: A:D.308

1 x PG5: 1-METHOXY-2-[2-(2-METHOXY-ETHOXY]-ETHANE(Non-covalent)

PG5.2:

4 residues within 4Å:

Chain A: D.104, V.337, I.372, F.380

No protein-ligand interaction detected (PLIP)

2 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3:	7 residues within 4Å: Chain A: G.169, D.170, T.311, Y.315, I.389, I.393 Ligands: U1H.1 No protein-ligand interaction detected (PLIP)
DMS.4:	5 residues within 4Å: Chain A: G.126, S.167, Y.168, F.283 Ligands: U1H.1 1 PLIP interactions: 1 interactions with chain A Water bridges: A:S.128

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Huang, C.Y. et al., Probing ligand binding of endothiapepsin by `temperature-resolved' macromolecular crystallography. Acta Crystallogr D Struct Biol (2022)

Release Date

2022-08-17

Peptides

Endothiapepsin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Endothiapepsin

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5hct.1 | 5r1t.1 | 5r1u.1 | 5r1v.1 | 5r1w.1 | 5r1x.1 | 5r1y.1 | 5r1z.1 | 5r20.1 | 5r21.1 | 5r22.1 | 5r23.1 | 5r24.1 | 5r25.1 | 5r26.1 | 5r27.1 | 5r28.1 | 5r29.1 | 5r2a.1 | 5r2b.1 | 5r2c.1 | 5r2d.1 | 5r2e.1 | 5r2f.1 | 5r2g.1 | 5r2h.1 | 5r2i.1 | 5r2j.1 | 5r2k.1 | 5r2l.1 more...less...

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