SMTL ID : 5tez.1

TCR F50 recgonizing M1-HLA-A2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

hetero-1-1-1-1-mer

Ligands

1 x GLY- ILE- LEU- GLY- PHE- VAL- PHE- THR- LEU: GLY-ILE-LEU-GLY-PHE-VAL-PHE-THR-LEU(Non-covalent)

GLY-ILE-LEU-GLY-PHE-VAL-PHE-THR-LEU.1: 30 residues within 4Å: Chain A: Y.7, E.63, K.66, V.67, H.70, T.73, D.77, T.80, L.81, Y.84, R.97, Y.99, H.114, Y.123, T.143, K.146, W.147, V.152, Q.155, L.156, Y.159, W.167, Y.171 Chain C: A.29, N.31, I.95, Q.100 Chain D: E.30, L.96, W.99 33 PLIP interactions: 26 interactions with chain A, 1 interactions with chain C, 6 interactions with chain D Hydrophobic interactions: A:Y.7, A:K.66, A:V.67, A:T.73, A:D.77, A:L.81, A:L.81, A:Y.99, A:Y.99, A:Y.123, A:T.143, A:W.147, A:V.152, A:Q.155, A:Y.159, D:W.99 Hydrogen bonds: A:K.66, A:D.77, A:Y.99, A:T.143, A:Y.171, A:Y.171, C:Q.100 Water bridges: A:K.66, A:Y.116, A:K.146, D:E.30, D:E.30, D:E.30, D:E.30, D:N.51 Salt bridges: A:K.146 pi-Stacking: A:W.147

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, X. et al., Structural basis for clonal diversity of the human T-cell response to a dominant influenza virus epitope. J. Biol. Chem. (2017)

Release Date

2017-09-27

Peptides

HLA class I histocompatibility antigen, A-2 alpha chain: A
Beta-2-microglobulin: B
TCR F50 alpha chain: C
TCR F50 beta chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
I

D
J

HLA class I histocompatibility antigen, A-2 alpha chain

Beta-2-microglobulin

TCR F50 alpha chain

TCR F50 beta chain

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