SMTL ID : 5tkt.1

FACTOR XIA IN COMPLEX WITH THE INHIBITOR METHYL ((12E,15S)-15-(((2E)-3-(5-CHLORO-2-(1H-TETRAZOL-1-YL)PHENYL)-2-PROPENOYL)AMINO)-9-OXO-8,17,19-TRIAZATRICYCLO[14.2.1.0~2,7~]NONADECA-1(18),2,4,6,12,16(19)-HEXAEN-5-YL)CARBAMATE

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.12 Å

Oligo State

monomer

Ligands

1 x 7DS: METHYL ((12E,15S)-15-(((2E)-3-(5-CHLORO-2-(1H-TETRAZOL-1-YL)PHENYL)-2-PROPENOYL)AMINO)-9-OXO-8,17,19-TRIAZATRICYCLO[14.2.1.0~2, 7~]NONADECA-1(18),2,4,6,12,16(19)-HEXAEN-5-YL)CARBAMATE(Non-covalent)

7DS.1: 29 residues within 4Å: Chain A: R.26, H.27, L.28, C.29, H.44, C.45, Y.134, L.137, I.141, D.182, A.183, C.184, K.185, G.186, D.187, S.188, T.206, S.207, W.208, G.209, E.210, G.211, C.212, G.219, V.220, Y.221 Ligands: EDO.4, EDO.7, EDO.8 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:L.28, A:Y.134, A:I.141, A:T.206 Hydrogen bonds: A:R.26, A:H.27, A:L.28, A:K.185, A:G.186, A:D.187, A:S.188, A:S.188 Water bridges: A:R.26, A:R.26, A:R.26, A:R.26, A:G.209

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: R.161, R.177 2 PLIP interactions: 2 interactions with chain A Salt bridges: A:R.161, A:R.177 SO4.3: 10 residues within 4Å: Chain A: S.7, V.8, R.9, G.10, E.11, W.12, P.13, I.61, L.62, L.145 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:G.10, A:E.11, A:W.12, A:W.12, A:I.61 Water bridges: A:I.61

11 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.4: 4 residues within 4Å: Chain A: K.185 Ligands: 7DS.1, EDO.7, EDO.8 3 PLIP interactions: 3 interactions with chain A Water bridges: A:K.185, A:K.185, A:K.185 EDO.5: 5 residues within 4Å: Chain A: N.36, T.102, V.103, G.104, Y.105 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.36, A:Y.105 EDO.6: 2 residues within 4Å: Chain A: R.9, L.62 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.9 Water bridges: A:N.63 EDO.7: 7 residues within 4Å: Chain A: L.137, G.209, E.210, G.211 Ligands: 7DS.1, EDO.4, EDO.8 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.209, A:G.211 Water bridges: A:K.185 EDO.8: 7 residues within 4Å: Chain A: E.89, W.208, G.209, E.210 Ligands: 7DS.1, EDO.4, EDO.7 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:E.210 Water bridges: A:G.209, A:G.209, A:E.210 EDO.9: 2 residues within 4Å: Chain A: T.168, H.169 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:H.169 EDO.10: 4 residues within 4Å: Chain A: Q.25, I.67, K.68, E.69 3 PLIP interactions: 3 interactions with chain A Water bridges: A:H.19, A:Q.25, A:Q.25 EDO.11: 4 residues within 4Å: Chain A: H.169, M.171, I.172, N.223 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.155, A:H.169 Water bridges: A:V.153 EDO.12: 6 residues within 4Å: Chain A: S.90, G.91, Y.92, T.168, K.170, M.171 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.90, A:Y.92, A:T.168 Water bridges: A:Y.92 EDO.13: 4 residues within 4Å: Chain A: E.11, W.12, W.128, K.147 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.147 EDO.14: 6 residues within 4Å: Chain A: I.34, G.35, W.38, L.232, T.235, Q.236 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:T.235, A:Q.236

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Corte, J.R. et al., Structure-Based Design of Macrocyclic Factor XIa Inhibitors: Discovery of the Macrocyclic Amide Linker. J. Med. Chem. (2017)

Release Date

2017-03-01

Peptides

Factor XIa (Light Chain): A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Factor XIa (Light Chain)

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