SMTL ID : 5tmk.1 (2 other biounits)

Optimization of 3,5-Disubstitued Piperidine: Discovery of Non-Peptide mimetics as an Orally Active Renin Inhibitor

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.65 Å

Oligo State

monomer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 3 residues within 4Å: Chain A: H.71, N.72, T.74 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.72

1 x 7EJ: 1-(4-methoxybutyl)-N-(2-methylpropyl)-N-[(3S,5R)-5-(morpholine-4-carbonyl)piperidin-3-yl]-5-phenyl-1H-pyrrole-2-carboxamide(Non-covalent)

7EJ.2: 24 residues within 4Å: Chain A: T.15, Q.16, Y.17, V.33, D.35, G.37, Y.80, S.81, T.82, P.115, F.116, L.118, A.119, F.121, V.124, Y.159, L.221, D.223, T.224, G.225, A.226, S.227, I.302, T.306 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:Q.16, A:P.115, A:F.116, A:A.119, A:V.124 Hydrogen bonds: A:Y.17, A:S.81, A:D.223

3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)

DMS.3: 4 residues within 4Å: Chain A: S.81, T.82, M.300, D.301 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:D.301 DMS.4: 7 residues within 4Å: Chain A: D.14, A.279, D.280, V.282, F.283, A.296, R.318 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.318 pi-Cation interactions: A:F.283 DMS.5: 8 residues within 4Å: Chain A: K.247, R.248, L.249, F.250, D.251, Y.252, H.298, A.299 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:A.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tokuhara, H. et al., Optimization of 3,5-Disubstitued Piperidine: Discovery of Non-Peptide mimetics as an Orally Active Renin Inhibitor. To be published

Release Date

2017-10-18

Peptides

Renin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Renin

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