SMTL ID : 5u4a.1

Wild-type Transthyretin in complex with 5-[(1E)-2-(2-Chloro-4-boronic acid)ethenyl]-1,3-benzenediol

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

4 x 7VG: {3-chloro-4-[(E)-2-(3,5-dihydroxyphenyl)ethenyl]phenyl}boronic acid(Non-covalent)

7VG.1: 14 residues within 4Å: Chain A: K.16, L.18, A.109, L.111, S.118, T.119, T.120 Chain C: M.14, K.16, L.18, A.109, L.111, S.118 Ligands: 7VG.3 9 PLIP interactions: 5 interactions with chain C, 4 interactions with chain A Hydrophobic interactions: C:K.16, C:L.18, C:A.109, C:L.111, A:K.16, A:L.18, A:T.120 Hydrogen bonds: C:K.16, A:K.16 7VG.2: 17 residues within 4Å: Chain B: M.14, K.16, L.18, A.109, L.111, S.118, T.119, T.120 Chain D: K.16, L.18, E.55, A.109, L.111, S.118, T.119, T.120 Ligands: 7VG.4 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:K.16, B:L.111, B:T.120, D:K.16, D:L.18 Hydrogen bonds: D:K.16 7VG.3: 14 residues within 4Å: Chain A: M.14, K.16, L.18, A.109, L.111, S.118 Chain C: K.16, L.18, A.109, L.111, S.118, T.119, T.120 Ligands: 7VG.1 9 PLIP interactions: 4 interactions with chain C, 5 interactions with chain A Hydrophobic interactions: C:K.16, C:L.18, C:T.120, A:K.16, A:L.18, A:A.109, A:L.111 Hydrogen bonds: C:K.16, A:K.16 7VG.4: 17 residues within 4Å: Chain B: K.16, L.18, E.55, A.109, L.111, S.118, T.119, T.120 Chain D: M.14, K.16, L.18, A.109, L.111, S.118, T.119, T.120 Ligands: 7VG.2 6 PLIP interactions: 3 interactions with chain B, 3 interactions with chain D Hydrophobic interactions: B:K.16, B:L.18, D:K.16, D:L.111, D:T.120 Hydrogen bonds: B:K.16

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Smith, T.P. et al., Stilbene Boronic Acids Form a Covalent Bond with Human Transthyretin and Inhibit Its Aggregation. J. Med. Chem. (2017)

Release Date

2017-09-27

Peptides

Transthyretin: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Transthyretin

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